Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002527 (alaS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002527 showshow history
Names
alaS ECDH10B_2865
Product
alanyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2909945 2912575 2631 877
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012947 (IPR012947 Threonyl/alanyl tRNA synthetase, SAD) Jul 2009
Automated Process Approved IPR003156 (IPR003156 DHHA1 domain) Jul 2009
Automated Process Approved IPR002318 (IPR002318 Alanine-tRNA ligase, class IIc) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012947
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003156
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016876 (DEPRECATED) ligase activity, forming aminoacyl-tRNA and related compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012947
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name alaS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008869
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2865 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alanyl-tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012947 Threonyl/alanyl tRNA synthetase, SAD Protein Sequence Similarity - InterPro Domain: IPR012947
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002318 Alanine-tRNA ligase, class IIc Protein Sequence Similarity - InterPro Domain: IPR002318
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003156 DHHA1 domain Protein Sequence Similarity - InterPro Domain: IPR003156
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008869 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008869
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012947
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016876 (DEPRECATED) ligase activity, forming aminoacyl-tRNA and related compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012947
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003156
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000284 alaS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000148 alaS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019321 alaS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002761 alaS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002849 alaS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008292 alaS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002686 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008468 alaS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002691 alaS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006526 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007395 alaS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007345 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008188 alaS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008797 alaS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003146 alaS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007417 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001259 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007283 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005803 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005278 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008094 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008780 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007418 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006573 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007397 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008215 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008493 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007944 alaS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008250 alaS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027672 alaS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006340 alaS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007508 alaS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008869 alaS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002766 alaS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003002 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002818 alaS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133588 alaS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000842 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003067 alaS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063673 alaS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002719 alaS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002056 alaS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004240 alaS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007113 alaS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000149 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003233 alaS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007392 alaS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008715 alaS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008267 alaS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006577 alaS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007373 alaS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008830 alaS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005371 alaS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005387 alaS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006495 alaS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007388 alaS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005672 alaS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002713 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002684 alaS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003529 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007552 alaS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005672 alaS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007050 alaS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005259 alaS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111323 alaS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084445 alaS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098852 alaS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006473 alaS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006818 alaS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003101 alaS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008592 alaS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005565 alaS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003311 alaS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074074 alaS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088974 alaS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002999 alaS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003110 alaS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001032 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002568 alaS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000003 alaS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003954 alaS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002375 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235079 alaS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005004 alaS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003407 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007089 alaS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004046 alaS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126439 alaS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006509 alaS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005999 alaS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003785 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005979 alaS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004335 alaS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030521 alaS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007441 alaS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000960 alaS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003657 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004828 alaS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007253 alaS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000867 alaS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001015 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004004 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2904945 to 2917575
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002522luxSCDScomplement29047822905297Downstream
AEC-0004269sraDncRNAforward29053662905443Downstream
AEC-0002523gshACDScomplement29054472907003Downstream
AEC-0002524yqaACDScomplement29070762907504Downstream
AEC-0002525yqaBCDScomplement29075012908067Downstream
AEC-0004155argQtRNAcomplement29083482908424Downstream
AEC-0004156argZtRNAcomplement29086232908699Downstream
AEC-0004157argYtRNAcomplement29087622908838Downstream
AEC-0004158argVtRNAcomplement29090372909113Downstream
AEC-0004159serVtRNAcomplement29091172909209Downstream
AEC-0002526csrACDScomplement29095252909710Downstream
AEC-0002527alaSCDScomplement29099452912575Matches
AEC-0002528recXCDScomplement29127032913203Upstream
AEC-0002529ygaDCDScomplement29144132914910Upstream
AEC-0002530mltBCDScomplement29150552916140Upstream
AEC-0002531srlACDSforward29163962916959Upstream
AEC-0002532srlECDSforward29169562917915Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948