Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002531 (srlA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002531 showshow history
Names
srlA ECDH10B_2870
Product
glucitol/sorbitol-specific enzyme IIC component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2916396 2916959 564 188
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004699 (IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004699
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004699
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name srlA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008890
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2870 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glucitol/sorbitol-specific enzyme IIC component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor Protein Sequence Similarity - InterPro Domain: IPR004699
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008890 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008890
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004699
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004699
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003105 srlA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003086 srlA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008286 srlA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002691 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008462 srlA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002696 srlA CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0006520 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007401 srlA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007351 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079412 srlA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008182 srlA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008803 srlA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007423 srlA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001265 CDS
Person Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010926 srlA pseudogene
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0285375 srlA pseudogene
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006345 srlA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007513 srlA CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0008890 srlA CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0002771 srlA CDS
Person Uncurated Go view Escherichia coli SE11 AFS-0003007 CDS
Person Uncurated Go view Escherichia coli SMS-3-5 AFT-0002823 srlA CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0133593 srlA pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000847 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003073 srlA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007119 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000143 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003238 srlA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007397 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008732 srlA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008284 srlA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006571 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007378 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008825 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005376 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005393 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006501 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007393 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005666 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002718 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002689 srlA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003537 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007557 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005667 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007055 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005264 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111339 srlA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084450 srlA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098873 srlA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006467 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006812 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008209 CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003096 srlA CDS
Person Uncurated Go view Shigella boydii BS512 ADJ-0008587 srlA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005559 srlA CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0003316 srlA CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0074080 srlA pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0088979 srlA pseudogene
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002994 srlA CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0003115 srlA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000771 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003278 gutA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001515 gutA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002540 gutA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002780 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2911396 to 2921959
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002527alaSCDScomplement29099452912575Upstream
AEC-0002528recXCDScomplement29127032913203Upstream
AEC-0002529ygaDCDScomplement29144132914910Upstream
AEC-0002530mltBCDScomplement29150552916140Upstream
AEC-0002531srlACDSforward29163962916959Matches
AEC-0002532srlECDSforward29169562917915Overlaps Downstream
AEC-0002533srlBCDSforward29179262918297Downstream
AEC-0002534srlDCDSforward29183012919080Downstream
AEC-0002535gutMCDSforward29191852919544Downstream
AEC-0002536srlRCDSforward29196112920384Downstream
AEC-0002537gutQCDSforward29203772921342Downstream
AEC-0002538norRCDScomplement29213392922853Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948