Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002532 (srlE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002532 showshow history
Names
srlE ECDH10B_2871
Product
glucitol/sorbitol-specific enzyme IIB component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2916956 2917915 960 320
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR017441 (IPR017441 Protein kinase, ATP binding site) Jul 2009
Automated Process Approved IPR011618 (IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal) Jul 2009
Automated Process Approved IPR011638 (IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal) Jul 2009
Automated Process Approved IPR004702 (IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006468 protein phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017441
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017441
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004672 protein kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017441
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name srlE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008892
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2871 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glucitol/sorbitol-specific enzyme IIB component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal Protein Sequence Similarity - InterPro Domain: IPR011618
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017441 Protein kinase, ATP binding site Protein Sequence Similarity - InterPro Domain: IPR017441
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II Protein Sequence Similarity - InterPro Domain: IPR004702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008892 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008892
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006468 protein phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017441
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004672 protein kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017441
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017441
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003094 srlE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003079 srlE CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008285 srlE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002692 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008461 srlE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002697 srlE CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0006519 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007402 srlE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007352 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079413 srlE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008181 srlE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008804 srlE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007424 srlE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001268 CDS
Person Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010927 srlE pseudogene
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0285376 srlE pseudogene
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006346 srlE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007514 srlE CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0008892 srlE CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0002772 srlE CDS
Person Uncurated Go view Escherichia coli SE11 AFS-0003008 CDS
Person Uncurated Go view Escherichia coli SMS-3-5 AFT-0002824 srlE CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285297 srlE pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000850 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003074 srlE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007120 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000142 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003239 srlE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007398 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008736 srlE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008287 srlE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006570 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007379 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008824 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005377 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005394 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006502 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007394 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005665 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002719 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002690 srlE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003538 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007558 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005666 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007056 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005265 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111341 srlE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084451 srlE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098876 srlE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006466 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006811 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008210 CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003095 srlE CDS
Person Uncurated Go view Shigella boydii BS512 ADJ-0008586 srlE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005558 srlE CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003317 srlE pseudogene
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0074081 srlE CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0256085 srlE CDS
Person Uncurated Go view Shigella flexneri 8401 BAG-0002993 srlE pseudogene
Automated Process Approved Go view Shigella sonnei 046 ADD-0003116 srlE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000770 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003274 gutE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001516 gutE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002541 gutE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002779 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2911956 to 2922915
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002527alaSCDScomplement29099452912575Upstream
AEC-0002528recXCDScomplement29127032913203Upstream
AEC-0002529ygaDCDScomplement29144132914910Upstream
AEC-0002530mltBCDScomplement29150552916140Upstream
AEC-0002531srlACDSforward29163962916959Overlaps Upstream
AEC-0002532srlECDSforward29169562917915Matches
AEC-0002533srlBCDSforward29179262918297Downstream
AEC-0002534srlDCDSforward29183012919080Downstream
AEC-0002535gutMCDSforward29191852919544Downstream
AEC-0002536srlRCDSforward29196112920384Downstream
AEC-0002537gutQCDSforward29203772921342Downstream
AEC-0002538norRCDScomplement29213392922853Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948