Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002533 (srlB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002533 showshow history
Names
srlB ECDH10B_2872
Product
glucitol/sorbitol-specific enzyme IIA component of PTS
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2917926 2918297 372 124
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004716 (IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004716
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name srlB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008894
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2872 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glucitol/sorbitol-specific enzyme IIA component of PTS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component Protein Sequence Similarity - InterPro Domain: IPR004716
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008894 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008894
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004716
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002684 srlB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002849 srlB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008284 srlB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002693 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008460 srlB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002698 srlB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006518 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007403 srlB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007353 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079414 srlB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008180 srlB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008805 srlB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007425 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001269 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007293 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005813 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005289 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008085 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008790 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007409 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006584 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007408 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008226 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008483 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007933 srlB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008261 srlB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027682 srlB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006347 srlB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007515 srlB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008894 srlB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002773 srlB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003009 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002825 srlB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133596 srlB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000851 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003075 srlB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001317 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007121 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000141 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003240 slrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007399 srlB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008741 slrB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008292 slrB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006569 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007380 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008823 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005378 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005395 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006503 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007395 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005664 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002720 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002691 srlB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003539 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007559 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005665 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007057 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005266 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111344 srlB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084452 srlB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098879 slrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006465 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006810 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008211 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003094 srlB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008585 srlB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005557 srlB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003320 srlB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074082 srlB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088980 srlB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002992 srlB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003117 srlB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000769 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003272 gutB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001517 gutB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002542 gutB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002778 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2912926 to 2923297
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002528recXCDScomplement29127032913203Upstream
AEC-0002529ygaDCDScomplement29144132914910Upstream
AEC-0002530mltBCDScomplement29150552916140Upstream
AEC-0002531srlACDSforward29163962916959Upstream
AEC-0002532srlECDSforward29169562917915Upstream
AEC-0002533srlBCDSforward29179262918297Matches
AEC-0002534srlDCDSforward29183012919080Downstream
AEC-0002535gutMCDSforward29191852919544Downstream
AEC-0002536srlRCDSforward29196112920384Downstream
AEC-0002537gutQCDSforward29203772921342Downstream
AEC-0002538norRCDScomplement29213392922853Downstream
AEC-0002539norVCDSforward29230402924479Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948