Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002534 (srlD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002534 showshow history
Names
srlD ECDH10B_2873
Product
sorbitol-6-phosphate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2918301 2919080 780 260
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR002198 (IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR) Jul 2009
Automated Process Approved IPR002347 (IPR002347 Short-chain dehydrogenase/reductase SDR) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name srlD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008896
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2873 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product sorbitol-6-phosphate dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002347 Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008896 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008896
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002796 srlD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002935 srlD CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008283 srlD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002694 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008459 srlD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002699 srlD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006517 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007404 srlD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007354 srlD pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079415 srlD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008179 srlD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008806 srlD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007426 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001270 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007294 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005814 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005290 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008084 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008791 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007408 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006585 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007409 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008227 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008482 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007932 srlD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008262 srlD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027683 srlD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006348 srlD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007516 srlD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008896 srlD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002774 srlD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003010 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002826 srlD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133597 srlD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000852 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003076 srlD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007122 srlD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000140 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003241 srlD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007400 srlD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008743 srlD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008294 srlD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006568 srlD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007381 srlD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005379 srlD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005396 srlD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006504 srlD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007396 srlD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005663 srlD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002721 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002692 srlD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003540 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007560 srlD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005664 srlD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007058 srlD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005267 srlD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111346 srlD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084453 srlD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098882 srlD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006464 srlD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006809 srlD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008212 srlD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003093 srlD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008584 srlD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005556 srlD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003321 srlD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074083 srlD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088981 srlD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002991 srlD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000768 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003269 gutD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001518 gutD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002543 gutD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002777 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2913301 to 2924080
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002529ygaDCDScomplement29144132914910Upstream
AEC-0002530mltBCDScomplement29150552916140Upstream
AEC-0002531srlACDSforward29163962916959Upstream
AEC-0002532srlECDSforward29169562917915Upstream
AEC-0002533srlBCDSforward29179262918297Upstream
AEC-0002534srlDCDSforward29183012919080Matches
AEC-0002535gutMCDSforward29191852919544Downstream
AEC-0002536srlRCDSforward29196112920384Downstream
AEC-0002537gutQCDSforward29203772921342Downstream
AEC-0002538norRCDScomplement29213392922853Downstream
AEC-0002539norVCDSforward29230402924479Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948