Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002544 (ascF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002544 showshow history
Names
ascF ECDH10B_2883
Product
fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component; IIC component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2930088 2931545 1458 486
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001996 (IPR001996 Phosphotransferase system, IIB component, type 1) Jul 2009
Automated Process Approved IPR003352 (IPR003352 Phosphotransferase system, EIIC) Jul 2009
Automated Process Approved IPR011535 (IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component) Jul 2009
Automated Process Approved IPR004719 (IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component) Jul 2009
Automated Process Approved IPR013013 (IPR013013 Phosphotransferase system, EIIC component, type 1) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ascF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008926
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2883 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component; IIC component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003352 Phosphotransferase system, EIIC Protein Sequence Similarity - InterPro Domain: IPR003352
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component Protein Sequence Similarity - InterPro Domain: IPR011535
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013013 Phosphotransferase system, EIIC component, type 1 Protein Sequence Similarity - InterPro Domain: IPR013013
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Protein Sequence Similarity - InterPro Domain: IPR004719
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001996 Phosphotransferase system, IIB component, type 1 Protein Sequence Similarity - InterPro Domain: IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0008926 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0008926
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003286 ascF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002881 ascF CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008272 ascF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002705 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008448 ascF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002713 ascF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006506 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007416 ascF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007021 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008167 ascF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008817 ascF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007437 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001282 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007305 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005826 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005301 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008072 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008802 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007396 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006596 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007420 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008238 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008471 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007920 ascF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008273 ascF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027693 ascF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006358 bglF_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007526 ascF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0008926 ascF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002784 ascF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003020 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002837 ascF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133607 ascF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000863 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003086 ascF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062427 ascF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001244 ascF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000553 ascF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003705 ascF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003083 ascF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005539 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002981 ascF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003128 ascF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001778 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003748 ascF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000712 ascF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001065 ascF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001083 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2925088 to 2936545
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002540norWCDSforward29244762925609Upstream
AEC-0002541hypFCDScomplement29257372927989Upstream
AEC-0002542hydNCDScomplement29281422928669Upstream
AEC-0002543ascGCDScomplement29288182929831Upstream
AEC-0002544ascFCDSforward29300882931545Matches
AEC-0002545ascBCDSforward29315542932978Downstream
AEC-0002546hycICDScomplement29331372933607Downstream
AEC-0002547hycHCDScomplement29336002934010Downstream
AEC-0002548hycGCDScomplement29340072934774Downstream
AEC-0002549hycFCDScomplement29347742935316Downstream
AEC-0002550hycECDScomplement29353262937035Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948