Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002610 (gudD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002610 showshow history
Names
gudD ECDH10B_2955
Product
(D)-glucarate dehydratase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3009945 3011285 1341 447
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001354 (IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase) Jul 2009
Automated Process Approved IPR013342 (IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal) Jul 2009
Automated Process Approved IPR017653 (IPR017653 Glucarate dehydratase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019394 glucarate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008872 glucarate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gudD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009134
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2955 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product (D)-glucarate dehydratase 1 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase Protein Sequence Similarity - InterPro Domain: IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013342
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017653 Glucarate dehydratase Protein Sequence Similarity - InterPro Domain: IPR017653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009134 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009134
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0019394 glucarate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008872 glucarate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002614 gudD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002661 gudD CDS
Ortholog
Person Uncurated Go view Dickeya dadantii 3937 ABF-0014853 gudD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009009 CDS
Person Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002797 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008366 CDS
Person Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002784 gudD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006424 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005905 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008982 CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079506 gudD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009814 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008970 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003247 gudD CDS
Person Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007527 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007385 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005905 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005382 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009102 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008883 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010146 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006681 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010382 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006179 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010046 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010255 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008354 CDS
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027775 gudD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006136 gudD CDS
Person Uncurated Go view Escherichia coli HS ADR-0007606 CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0009134 gudD CDS
Person Uncurated Go view Escherichia coli K-12 W3110 ADY-0002855 gudD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003102 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002923 CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133683 gudD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000942 CDS
Person Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003166 gudD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003139 gudD CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063889 gudD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002045 gudD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004192 gudD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004013 gudD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007268 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000004 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003391 gudD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007535 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009140 gudD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006425 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007525 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006487 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005501 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005542 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006647 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007540 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005528 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002853 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002824 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004466 gudD pseudogene
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003696 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007697 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005518 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007191 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005399 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0111653 ygcX CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084586 ygcX CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099243 gudD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006313 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006659 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007610 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002943 ygcX CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008498 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003436 ygcX pseudogene
Person Uncurated Go view Shigella flexneri 2457T ABQ-0074168 ygcX CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089050 ygcX CDS
Person Uncurated Go view Shigella flexneri 8401 BAG-0002852 ygcX CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0003220 gudD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3004945 to 3016285
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000041IS2.7repeat_regioncomplement30039613005291Downstream
AEC-0000069relApseudogenecomplement30052923005551(Interval #1) Downstream
AEC-0002608rumACDScomplement30055993006900Downstream
AEC-0002609barACDSforward30069573009713Downstream
AEC-0002610gudDCDScomplement30099453011285Matches
AEC-0002611gudXCDScomplement30113063012646Upstream
AEC-0002612gudPCDScomplement30126483014000Upstream
AEC-0002613yqcACDScomplement30144353014884Upstream
AEC-0002614truCCDScomplement30149023015684Upstream
AEC-0002615yqcCCDScomplement30156843016013Upstream
AEC-0004270csrBncRNAcomplement30160563016424Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948