Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002611 (gudX) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002611 showshow history
Names
gudX ECDH10B_2956
Product
predicted glucarate dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3011306 3012646 1341 447
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001354 (IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase) Jul 2009
Automated Process Approved IPR013341 (IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain) Jul 2009
Automated Process Approved IPR013342 (IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gudX Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009136
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2956 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted glucarate dehydratase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR013341
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013342
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase Protein Sequence Similarity - InterPro Domain: IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009136 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009136
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003116 gudX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002903 gudX CDS
Ortholog
Person Uncurated Go view Dickeya dadantii 3937 ABF-0014852 gudX CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009008 CDS
Person Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002798 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008365 CDS
Person Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002785 ygcY CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006423 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005904 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008981 CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079507 ygcY CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009813 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008969 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003248 gudX CDS
Person Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007528 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004148 CDS
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0285229 gudX pseudogene
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006135 gudX CDS
Person Uncurated Go view Escherichia coli HS ADR-0007607 CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0009136 gudX CDS
Person Uncurated Go view Escherichia coli K-12 W3110 ADY-0002856 gudX CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003103 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002924 CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133684 gudX pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000943 CDS
Person Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003167 ygcY CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003140 gudX CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063890 gudX CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002049 gudX CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004193 gudX CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004014 gudX CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007269 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000003 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003392 pseudogene
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009143 ygcY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006424 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007526 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006488 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005502 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005543 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006648 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007541 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005527 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004465 gudX pseudogene
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003697 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007698 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005517 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007192 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005400 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0111654 ygcY CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084587 ygcY CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099246 gudX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006312 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006658 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007611 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002944 ygcY CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003437 ygcY pseudogene
Person Uncurated Go view Shigella flexneri 2457T ABQ-0074169 ygcY CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089051 ygcY CDS
Person Uncurated Go view Shigella flexneri 8401 BAG-0002851 ygcY CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0003221 ygcY CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3006306 to 3017646
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002608rumACDScomplement30055993006900Downstream
AEC-0002609barACDSforward30069573009713Downstream
AEC-0002610gudDCDScomplement30099453011285Downstream
AEC-0002611gudXCDScomplement30113063012646Matches
AEC-0002612gudPCDScomplement30126483014000Upstream
AEC-0002613yqcACDScomplement30144353014884Upstream
AEC-0002614truCCDScomplement30149023015684Upstream
AEC-0002615yqcCCDScomplement30156843016013Upstream
AEC-0004270csrBncRNAcomplement30160563016424Upstream
AEC-0002616sydCDScomplement30166353017180Upstream
AEC-0002617queFCDSforward30172483018096Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948