Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002624 (fucP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002624 showshow history
Names
fucP ECDH10B_2970
Product
L-fucose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3026135 3027451 1317 439
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Automated Process Approved IPR005275 (IPR005275 L-fucose-proton symporter FucP) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fucP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009187
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2970 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-fucose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005275 L-fucose-proton symporter FucP Protein Sequence Similarity - InterPro Domain: IPR005275
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009187 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009187
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002972 fucP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003057 fucP CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001300 fucP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002737 fucP CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002813 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008350 fucP CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002798 fucP CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006409 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005887 fucP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008965 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079525 fucP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009796 fucP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008952 fucP CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003262 fucP CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007542 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004163 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007403 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005923 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005400 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009120 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008901 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010128 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006700 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010078 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006197 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010066 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009364 fucP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008373 fucP CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027790 fucP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006118 fucP_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007621 fucP CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009187 fucP CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002870 fucP CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003118 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002940 fucP CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133698 fucP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000958 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003182 fucP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007287 fucP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004919 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003412 fucP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007555 fucP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009178 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008714 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006407 fucP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007544 fucP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006506 fucP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005518 fucP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005560 fucP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006665 fucP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007558 fucP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005509 fucP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002867 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002838 fucP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003718 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007715 fucP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005500 fucP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007209 fucP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005417 fucP CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111678 fucP CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084601 fucP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006294 fucP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006641 fucP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007628 fucP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007553 fucP CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074185 fucP CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089066 fucP CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003074 fucP CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003234 fucP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001053 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000024 fucP_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000579 fucP_1 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3021135 to 3032451
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002619sdaCCDSforward30201293021418Upstream
AEC-0002620sdaBCDSforward30214763022843Upstream
AEC-0002621ygdGCDSforward30229553023710Upstream
AEC-0002622fucOCDScomplement30237653024916Upstream
AEC-0002623fucACDScomplement30249413025588Upstream
AEC-0002624fucPCDSforward30261353027451Matches
AEC-0002625fucICDSforward30274843029259Downstream
AEC-0002626fucKCDSforward30293683030786Downstream
AEC-0002627fucUCDSforward30307883031210Downstream
AEC-0002628fucRCDSforward30312683031999Downstream
AEC-0002629ygdECDScomplement30320433033143Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948