Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002626 (fucK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002626 showshow history
Names
fucK ECDH10B_2972
Product
L-fuculokinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3029368 3030786 1419 473

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Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000577 (IPR000577 Carbohydrate kinase, FGGY) Jul 2009
Automated Process Approved IPR013450 (IPR013450 L-fuculokinase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008737 L-fuculokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fucK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009191
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2972 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-fuculokinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000577 Carbohydrate kinase, FGGY Protein Sequence Similarity - InterPro Domain: IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013450 L-fuculokinase Protein Sequence Similarity - InterPro Domain: IPR013450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Uncurated comment The coordinates of this feature have been changed from those reported in the GenBank entry (GBAN:CP000948.1) to correspond to the start site predicted in Escherichia coli K-12 MG1655 (ASAP:ABE-0009191), removing 10 codons from the N-terminus. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu
Reference: Escherichia coli K-12 DH10B 		Mar 2020
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009191 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009191
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008737 L-fuculokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003022 fucK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003279 fucK CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002735 fucK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008987 fucK CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002815 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008348 fucK CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002800 fucK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006407 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005885 fucK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008963 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009794 fucK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008950 fucK CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003264 fucK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007544 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004165 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007405 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005925 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005402 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009122 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008903 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010126 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006702 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010080 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006199 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010068 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009366 fucK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008375 fucK CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027792 fucK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006116 fucK CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007623 fucK CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009191 fucK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002872 fucK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003120 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002942 fucK CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133700 fucK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000960 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003184 fucK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007289 fucK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004917 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003414 fucK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007557 fucK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009186 fucK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008721 fucK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006405 fucK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007546 fucK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006508 fucK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005520 fucK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005562 fucK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006667 fucK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007560 fucK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005507 fucK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002869 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002840 fucK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003721 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007718 fucK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005498 fucK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007211 fucK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005419 fucK CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111680 fucK CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084603 fucK CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099291 fucK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006292 fucK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006639 fucK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007630 fucK CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003454 fucK CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003236 fucK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001055 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000026 xylB3_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000577 xylB3_2 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3024368 to 3035786
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002622fucOCDScomplement30237653024916Upstream
AEC-0002623fucACDScomplement30249413025588Upstream
AEC-0002624fucPCDSforward30261353027451Upstream
AEC-0002625fucICDSforward30274843029259Upstream
AEC-0002626fucKCDSforward30293683030786Matches
AEC-0002627fucUCDSforward30307883031210Downstream
AEC-0002628fucRCDSforward30312683031999Downstream
AEC-0002629ygdECDScomplement30320433033143Downstream
AEC-0002630ygdDCDScomplement30331363033531Downstream
AEC-0002631gcvACDScomplement30335503034467Downstream
AEC-0004271gcvBncRNAforward30345963034793Downstream
AEC-0002632ygdICDScomplement30348103035037Downstream
AEC-0002633csdACDSforward30352293036434Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948