Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002637 (amiC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002637 showshow history
Names
amiC ECDH10B_2987
Product
N-acetylmuramoyl-L-alanine amidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3039649 3040902 1254 418
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002508 (IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain) Jul 2009
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009253 peptidoglycan catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002508
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002508
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name amiC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009238
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2987 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product N-acetylmuramoyl-L-alanine amidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR002508
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009238 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009238
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009253 peptidoglycan catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002508
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002508
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001938 amiC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001650 amiC CDS
Ortholog
Person Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008208 CDS
Automated Process Approved Go view Dickeya dadantii 3937 ABF-0015921 amiC CDS
Person Uncurated Go view Dickeya parazeae Ech586 AGC-0000946 CDS
Person Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304727 CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002840 amiC CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0002720 amiC1 CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0009235 amiC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002858 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0008333 amiC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002839 amiC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006388 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0005848 amiC CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0009030 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079569 amiC CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0010169 amiC CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0008914 amiC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003284 amiC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007573 amiC CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0004176 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0007420 amiC CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0005940 amiC CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0005417 amiC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008918 amiC CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0010226 amiC CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0006718 amiC CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0010094 amiC CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0006214 amiC CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0010191 amiC CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0009381 amiC CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0008390 amiC CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027806 amiC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006070 amiC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007640 amiC CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0009238 amiC CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0002887 amiC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003134 CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0133715 amiC CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0000971 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003227 amiC CDS
Person Uncurated Go view Musicola paradisiaca Ech703 AGA-0007938 CDS
Automated Process Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061237 amiC CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0000552 amiC CDS
Automated Process Approved Go view Pectobacterium carotovorum WPP14 ADT-0000244 amiC CDS
Person Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001641 CDS
Person Uncurated Go view Pectobacterium sp. PC1 AFL-0005549 CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0004901 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003430 amiC CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0009232 amiC CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0008765 amiC CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0002884 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002855 amiC CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0003737 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0111707 amiC CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0084617 amiC CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099331 amiC CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0002984 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008456 amiC CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0007112 amiC CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0003467 CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0074202 amiC CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0089081 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003089 CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0003250 amiC CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000836 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0009581 CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001781 amiC_3 CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0001294 amiC CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000539 CDS
Automated Process Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241116 amiC CDS
Automated Process Approved Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007349 CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000607 amiC CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002336 CDS
Automated Process Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118632 amiC CDS
Automated Process Approved Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007977 CDS
Automated Process Approved Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007371 CDS
Automated Process Approved Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008648 CDS
Automated Process Approved Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006437 CDS
Automated Process Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032924 amiC CDS
Automated Process Approved Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005632 CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003584 amiC CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002024 CDS
Automated Process Approved Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006089 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0004941 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003128 amiC CDS
Automated Process Approved Go view Yersinia pseudotuberculosis PB1/+ AFV-0003758 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis YPIII AFW-0001221 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3034649 to 3045902
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004271gcvBncRNAforward30345963034793Downstream
AEC-0002632ygdICDScomplement30348103035037Downstream
AEC-0002633csdACDSforward30352293036434Downstream
AEC-0002634ygdKCDSforward30364343036877Downstream
AEC-0002635ygdLCDScomplement30369283037734Downstream
AEC-0002636mltACDScomplement30379733039070Downstream
AEC-0004160metZtRNAforward30392793039355Downstream
AEC-0004161metWtRNAforward30393893039465Downstream
AEC-0004162metVtRNAforward30394993039575Downstream
AEC-0002637amiCCDScomplement30396493040902Matches
AEC-0002638argACDSforward30411343042465Upstream
AEC-0002639recDCDScomplement30425273044353Upstream
AEC-0002640recBCDScomplement30443533047895Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948