Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002655 (ygeD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002655 showshow history
Names
ygeD ECDH10B_3005
Product
predicted inner membrane protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3064561 3065754 1194 398
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ygeD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009300
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_3005 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product predicted inner membrane protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009300 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009300
Reference: Escherichia coli K-12 MG1655
Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001561 lplT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001366 lplT CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018487 lplT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002865 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002702 lplT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009359 lplT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002877 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008313 lplT CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002856 ygeD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006366 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005828 lplT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006076 LplT CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079588 ygeD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010185 lplT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007124 lplT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003303 lplT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007591 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004194 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007441 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005959 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005437 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005881 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008938 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008302 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006738 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006234 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005545 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010595 lplT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005974 lplT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027825 ygeD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008358 lplT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007659 lplT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009300 lplT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002905 ygeD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003152 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002981 lplT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133733 ygeD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000990 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003248 ygeD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063954 ygeD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002135 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002603 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000853 ygeD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007323 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004880 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003449 ygeD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007592 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009296 ygeD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008830 ygeD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006370 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007581 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006543 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005555 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005597 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006702 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007595 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005472 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002903 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002873 ygeD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003760 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007752 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005464 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007246 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005454 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111751 ygeD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084636 ygeD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099381 ygeD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006258 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006606 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008145 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003005 ygeD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008438 lplT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005481 lplT CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003485 ygeD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074220 ygeD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089097 ygeD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003107 ygeD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003273 ygeD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000853 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009636 ygeD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001764 lplT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001277 ygeD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000555 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241190 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007366 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000587 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006863 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002546 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117930 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006572 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005056 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003861 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006435 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006458 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032943 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004504 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003604 ygeD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002047 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006110 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004923 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003147 ygeD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003780 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001201 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3059561 to 3070754
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002649ptsPCDScomplement30580803060326Downstream
AEC-0002650nudHCDScomplement30603393060869Downstream
AEC-0002651mutHCDSforward30615543062243Downstream
AEC-0002652ygdQCDSforward30623123063025Downstream
AEC-0002653ygdRCDSforward30631633063381Downstream
AEC-0002654tasCDSforward30634893064529Downstream
AEC-0002655ygeDCDScomplement30645613065754Matches
AEC-0002656aasCDScomplement30657473067906Overlaps Upstream
AEC-0004272rygAncRNAcomplement30679943068081Upstream
AEC-0004273rygBncRNAcomplement30681963068277Upstream
AEC-0002657galRCDSforward30684913069522Upstream
AEC-0002658lysACDScomplement30695293070791Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948