Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002661 (araE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002661 showshow history
Names
araE ECDH10B_3013
Product
arabinose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3072656 3074074 1419 473
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003663 (IPR003663 Sugar/inositol transporter) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR005828 (IPR005828 Major facilitator, sugar transporter-like) Jul 2009
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0022891 (DEPRECATED) substrate-specific transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name araE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009319
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3013 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product arabinose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003663 Sugar/inositol transporter Protein Sequence Similarity - InterPro Domain: IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005828 Major facilitator, sugar transporter-like Protein Sequence Similarity - InterPro Domain: IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009319 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009319
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0022891 (DEPRECATED) substrate-specific transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003663
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005828
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002976 araE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003053 araE CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002927 galP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009351 araE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002883 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008305 araE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002862 araE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006360 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005820 araE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006084 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079597 araE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010193 araE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007132 araE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003311 araE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007598 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004200 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007449 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005967 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005445 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005873 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008946 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008310 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006746 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005731 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006242 araE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005553 araE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007663 araE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005982 araE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027831 araE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008366 araE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007667 araE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009319 araE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002913 araE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003158 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002987 araE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133739 araE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000997 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0005383 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007333 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004870 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003456 araE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007602 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009325 araE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008858 araE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006360 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007591 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006553 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005565 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005607 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006711 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007605 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005462 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002912 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002882 araE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003770 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007762 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005454 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007256 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005464 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111776 araE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084644 araE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099402 araE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006248 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006596 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008155 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008431 araE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005488 araE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003491 araE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074226 araE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089103 araE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003113 araE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003279 araE CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3067656 to 3079074
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002656aasCDScomplement30657473067906Downstream
AEC-0004272rygAncRNAcomplement30679943068081Downstream
AEC-0004273rygBncRNAcomplement30681963068277Downstream
AEC-0002657galRCDSforward30684913069522Downstream
AEC-0002658lysACDScomplement30695293070791Downstream
AEC-0002659lysRCDSforward30709133071848Downstream
AEC-0002660ygeACDScomplement30718353072527Downstream
AEC-0002661araECDScomplement30726563074074Matches
AEC-0002662kduDCDScomplement30743893075150Upstream
AEC-0002663kduICDScomplement30751803076016Upstream
AEC-0002664yqeFCDScomplement30763033077484Upstream
AEC-0002665yqeGCDSforward30777393078968Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948