Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002701 (ygfO) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002701 showshow history
Names
ygfO ECDH10B_3057
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3116243 3117643 1401 467
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006042 (IPR006042 Xanthine/uracil permease) Jul 2009
Automated Process Approved IPR006043 (IPR006043 Xanthine/uracil/vitamin C permease) Jul 2009
Automated Process Approved IPR017588 (IPR017588 Uric acid permease UacT-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ygfO Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009463
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3057 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006042 Xanthine/uracil permease Protein Sequence Similarity - InterPro Domain: IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017588 Uric acid permease UacT-like Protein Sequence Similarity - InterPro Domain: IPR017588
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006043 Xanthine/uracil/vitamin C permease Protein Sequence Similarity - InterPro Domain: IPR006043
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009463 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009463
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004170 xanQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004448 xanQ CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002906 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008262 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002883 ygfO CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006307 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005769 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006152 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079620 xanQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009167 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007177 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003338 ygfO CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007644 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004253 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007509 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006029 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005506 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005811 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009008 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008371 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006810 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005794 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006305 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005616 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007727 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006045 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027893 ygfO CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008390 xanQ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007721 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009463 xanQ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002954 ygfO CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003207 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003013 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133797 ygfO CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001050 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003276 ygfO CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3111243 to 3122643
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002698ssnACDSforward31110533112381Upstream
AEC-0002699ygfMCDSforward31124323113211Upstream
AEC-0002700xdhDCDSforward31132083116078Upstream
AEC-0002701ygfOCDSforward31162433117643Matches
AEC-0002702guaDCDSforward31176583118977Downstream
AEC-0004038ygfQCDSforward31190133120380Downstream
AEC-0004529ygfSCDScomplement31204163120904Downstream
AEC-0002703ygfTCDScomplement31209043122823Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948