Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002706 (lysS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002706 showshow history
Names
lysS ECDH10B_3064
Product
lysine tRNA synthetase, constitutive
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3125549 3127066 1518 506
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Jul 2009
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Jul 2009
Automated Process Approved IPR016027 (IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like) Jul 2009
Automated Process Approved IPR004365 (IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type) Jul 2009
Automated Process Approved IPR004364 (IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)) Jul 2009
Automated Process Approved IPR002313 (IPR002313 Lysine-tRNA ligase, class II) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lysS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009486
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3064 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product lysine tRNA synthetase, constitutive Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like Protein Sequence Similarity - InterPro Domain: IPR016027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Protein Sequence Similarity - InterPro Domain: IPR004365
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Protein Sequence Similarity - InterPro Domain: IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002313 Lysine-tRNA ligase, class II Protein Sequence Similarity - InterPro Domain: IPR002313
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009486 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009486
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000044 lysS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000049 lysS CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009486 lysS CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3120549 to 3132066
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004529ygfSCDScomplement31204163120904Downstream
AEC-0002703ygfTCDScomplement31209043122823Downstream
AEC-0002704ygfUCDSforward31232593124707Downstream
AEC-0002705idiCDSforward31249573125505Downstream
AEC-0002706lysSCDScomplement31255493127066Matches
AEC-0002707prfBCDScomplement31270763128098(Interval #2) Upstream
AEC-0002707prfBCDScomplement31281003128174(Interval #1) Upstream
AEC-0002708recJCDScomplement31282653129998Upstream
AEC-0002709dsbCCDScomplement31300043130714Upstream
AEC-0002710xerDCDScomplement31307393131635Upstream
AEC-0002711fldBCDSforward31317473132268Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948