Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002709 (dsbC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002709 showshow history
Names
dsbC ECDH10B_3067
Product
protein disulfide isomerase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3130004 3130714 711 237
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Jul 2009
Automated Process Approved IPR009094 (IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily) Jul 2009
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dsbC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009494
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3067 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product protein disulfide isomerase II Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009094
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009494 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009494
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000652 dsbC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000705 dsbC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018053 dsbC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002885 dsbC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002674 dsbC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005952 dsbC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002916 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008251 dsbC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002893 dsbC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006296 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005757 dsbC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006164 DsbC CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079634 dsbC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009179 dsbC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007189 dsbC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003349 dsbC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007655 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004264 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007521 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006041 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005518 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005799 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009020 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008383 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006822 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005805 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006317 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005628 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007738 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006057 dsbC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027903 dsbC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008401 dsbC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007731 dsbC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009494 dsbC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002964 dsbC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003217 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003024 dsbC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133807 dsbC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001061 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003287 dsbC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061006 dsbC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000382 dsbC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001382 dsbC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001187 dsbC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007366 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004836 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003488 dsbC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007633 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009415 dsbC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008904 dsbC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006329 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007633 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006594 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005594 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005637 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007635 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005430 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002940 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002911 dsbC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003805 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007795 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005424 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007283 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005491 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111843 dsbC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084679 dsbC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099479 dsbC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006220 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009195 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008185 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003393 dsbC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008725 dsbC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003944 dsbC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003633 dsbC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074254 dsbC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089131 dsbC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003138 dsbC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003329 dsbC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000883 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009782 dsbC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001732 dsbC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001242 dsbC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000578 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242949 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007972 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000468 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006757 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002456 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118229 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006675 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004952 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003102 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006536 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006561 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033042 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004609 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003718 dsbC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000739 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006210 dsbC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004825 dsbC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003273 dsbC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003936 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001075 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3125004 to 3135714
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002705idiCDSforward31249573125505Downstream
AEC-0002706lysSCDScomplement31255493127066Downstream
AEC-0002707prfBCDScomplement31270763128098(Interval #2) Downstream
AEC-0002707prfBCDScomplement31281003128174(Interval #1) Downstream
AEC-0002708recJCDScomplement31282653129998Downstream
AEC-0002709dsbCCDScomplement31300043130714Matches
AEC-0002710xerDCDScomplement31307393131635Upstream
AEC-0002711fldBCDSforward31317473132268Upstream
AEC-0002712ygfXCDScomplement31323083132715Upstream
AEC-0002713ygfYCDScomplement31326963132962Upstream
AEC-0002714ygfZCDSforward31332053134185Upstream
AEC-0002715yqfACDScomplement31343813135040Upstream
AEC-0002716yqfBCDScomplement31352043135515Upstream
AEC-0002717bglACDSforward31355543136993Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948