Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002720 (gcvH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002720 showshow history
Names
gcvH ECDH10B_3078
Product
glycine cleavage complex lipoylprotein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3141052 3141441 390 130
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003016 (IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site) Jul 2009
Automated Process Approved IPR017453 (IPR017453 Glycine cleavage system H-protein, subgroup) Jul 2009
Automated Process Approved IPR002930 (IPR002930 Glycine cleavage system H-protein) Jul 2009
Automated Process Approved IPR011053 (IPR011053 Single hybrid motif) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006546 glycine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002930
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005960 glycine cleavage complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002930
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gcvH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009534
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3078 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glycine cleavage complex lipoylprotein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Protein Sequence Similarity - InterPro Domain: IPR003016
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002930 Glycine cleavage system H-protein Protein Sequence Similarity - InterPro Domain: IPR002930
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017453 Glycine cleavage system H-protein, subgroup Protein Sequence Similarity - InterPro Domain: IPR017453
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011053 Single hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011053
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009534 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009534
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006546 glycine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002930
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005960 glycine cleavage complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002930
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000706 gcvH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000968 gcvH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018066 gcvH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002896 gcvH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002662 gcvH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005941 gcvH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002927 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008239 gcvH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002903 gcvH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006285 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005744 gcvH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010063 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079645 gcvH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009191 gcvH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007202 gcvH CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003359 gcvH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007667 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004276 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007532 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006052 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005529 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005788 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009031 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008394 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006833 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005816 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006328 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005639 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007749 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006068 gcvH CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027914 gcvH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008412 gcvH CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007742 gcvH CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009534 gcvH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002975 gcvH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003228 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003034 gcvH CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133817 gcvH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001072 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003298 gcvH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060979 gcvH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000378 gcvH CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001373 gcvH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001164 gcvH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007379 gcvH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004826 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003500 gcvH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007645 gcvH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009444 gcvH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008932 gcvH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006317 gcvH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007645 gcvH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006606 gcvH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005606 gcvH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005649 gcvH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006753 gcvH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007647 gcvH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005417 gcvH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002951 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002922 gcvH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003818 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007809 gcvH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009248 gcvH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007295 gcvH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005504 gcvH CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111861 gcvH CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084690 gcvH CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099511 gcvH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006207 gcvH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009182 gcvH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008199 gcvH CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003382 gcvH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008737 gcvH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003933 gcvH CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003620 gcvH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074268 gcvH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089141 gcvH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003149 gcvH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003340 gcvH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003342 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009820 gcsH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001718 gcsH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001229 gcvH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003851 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242993 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007955 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000448 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006739 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002442 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118273 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006691 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004936 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003469 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006553 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006578 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033060 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004625 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003737 gcvH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000719 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006226 gcvH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004809 gcvH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003288 gcvH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003955 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001018 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3136052 to 3146441
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002717bglACDSforward31355543136993Downstream
AEC-0002718ygfFCDScomplement31370503137793Downstream
AEC-0002719gcvPCDScomplement31380603140933Downstream
AEC-0002720gcvHCDScomplement31410523141441Matches
AEC-0002721visCCDScomplement31430073144209Upstream
AEC-0002722ubiHCDScomplement31442323145410Upstream
AEC-0002723pepPCDScomplement31454073146732Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948