Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002722 (ubiH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002722 showshow history
Names
ubiH ECDH10B_3081
Product
2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3144232 3145410 1179 393
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011295 (IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase) Jul 2009
Automated Process Approved IPR010971 (IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6) Jul 2009
Automated Process Approved IPR006076 (IPR006076 FAD dependent oxidoreductase) Jul 2009
Automated Process Approved IPR003042 (IPR003042 (DEPRECATED) Aromatic-ring hydroxylase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ubiH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009545
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3081 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase Protein Sequence Similarity - InterPro Domain: IPR011295
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 Protein Sequence Similarity - InterPro Domain: IPR010971
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006076 FAD dependent oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003042 (DEPRECATED) Aromatic-ring hydroxylase-like Protein Sequence Similarity - InterPro Domain: IPR003042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009545 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009545
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006744 ubiquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010971
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000915 ubiH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000573 ubiH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018613 ubiH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002901 visB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002658 ubiH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005937 ubiH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002930 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008236 ubiH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002906 ubiH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006281 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005740 ubiH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010066 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079650 ubiH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009194 ubiH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007206 ubiH CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003362 ubiH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007671 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004279 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007537 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006056 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005533 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005784 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009036 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008398 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006838 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005820 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006332 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005644 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007754 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006072 ubiH CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027917 ubiH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008416 ubiH CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007745 ubiH CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009545 ubiH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002978 ubiH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003231 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003039 ubiH CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133820 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001075 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003302 ubiH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060673 ubiH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000311 visB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002432 visB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002887 ubiH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007383 ubiH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004823 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003506 ubiH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007649 ubiH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009455 ubiH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008942 ubiH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007649 ubiH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006611 ubiH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005610 ubiH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006758 ubiH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007651 ubiH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005413 ubiH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002954 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002925 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003825 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007813 ubiH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007299 ubiH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005507 ubiH CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111869 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084693 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099527 ubiH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006204 ubiH CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003379 ubiH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008740 ubiH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003930 ubiH CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003617 ubiH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074271 ubiH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089144 ubiH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003152 ubiH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003343 ubiH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003345 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009830 ubiH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001715 ubiH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001226 ubiH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002224 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242997 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007952 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000444 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006736 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002439 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118282 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006694 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004933 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003466 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006556 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006581 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033063 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004628 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003740 ubiH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000715 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006229 ubiH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004806 ubiH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003291 ubiH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003959 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001013 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3139232 to 3150410
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002719gcvPCDScomplement31380603140933Downstream
AEC-0002720gcvHCDScomplement31410523141441Downstream
AEC-0002721visCCDScomplement31430073144209Downstream
AEC-0002722ubiHCDScomplement31442323145410Matches
AEC-0002723pepPCDScomplement31454073146732Overlaps Upstream
AEC-0002724ygfBCDScomplement31467583147336Upstream
AEC-0002725zapACDSforward31475043147833Upstream
AEC-0004274ssrSncRNAforward31478753148057Upstream
AEC-0002726ygfACDSforward31481333148681Upstream
AEC-0004275rygCncRNAforward31487413148880Upstream
AEC-0002727serACDScomplement31490703150302Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948