Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002728 (rpiA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002728 showshow history
Names
rpiA ECDH10B_3089
Product
ribose 5-phosphate isomerase, constitutive
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3150558 3151217 660 220
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004788 (IPR004788 Ribose 5-phosphate isomerase, type A) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009052 pentose-phosphate shunt, non-oxidative branch GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004788
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004751 ribose-5-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004788
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rpiA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009567
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3089 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ribose 5-phosphate isomerase, constitutive Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004788 Ribose 5-phosphate isomerase, type A Protein Sequence Similarity - InterPro Domain: IPR004788
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009567 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009567
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009052 pentose-phosphate shunt, non-oxidative branch GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004788
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004751 ribose-5-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004788
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001505 rpiA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000982 rpiA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015176 rpiA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002908 rpiA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002651 rpiA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005928 rpiA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002936 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008227 rpiA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002912 rpiA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006274 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005729 rpiA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008568 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079656 rpiA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005763 rpiA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007217 rpiA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003370 rpiA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007677 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004285 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007547 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006066 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008323 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005774 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009046 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006120 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006849 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005830 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006342 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005654 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005235 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006082 rpiA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027926 rpiA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006940 rpiA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007753 rpiA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009567 rpiA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002986 rpiA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003237 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003045 rpiA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133828 rpiA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001081 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003309 rpiA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064223 rpiA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002235 rpiA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001008 rpiA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002285 rpiA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004815 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003513 rpiA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009478 rpiA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008964 rpiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002962 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002933 rpiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003833 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111886 rpiA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084700 rpiA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099543 rpiA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003373 rpiA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008748 rpiA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003921 rpiA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003611 rpiA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074278 rpiA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089151 rpiA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003158 rpiA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003349 rpiA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003076 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009851 rpiA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001709 rpiA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001220 rpiA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002230 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243008 rpiA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007945 rpiA2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000436 rpiA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006730 rpiA2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002435 rpiA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118299 rpiA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006700 rpiA2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004927 rpiA2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001528 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006562 rpiA2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006588 rpiA2 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033070 rpiA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004635 rpiA2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003749 rpiA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000706 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006235 rpiA2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004799 rpiA2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003298 rpiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003967 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001006 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3145558 to 3156217
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002723pepPCDScomplement31454073146732Downstream
AEC-0002724ygfBCDScomplement31467583147336Downstream
AEC-0002725zapACDSforward31475043147833Downstream
AEC-0004274ssrSncRNAforward31478753148057Downstream
AEC-0002726ygfACDSforward31481333148681Downstream
AEC-0004275rygCncRNAforward31487413148880Downstream
AEC-0002727serACDScomplement31490703150302Downstream
AEC-0002728rpiACDScomplement31505583151217Matches
AEC-0002729yqfEpseudogenecomplement31512733151465Upstream
AEC-0002730argPCDSforward31516453152538Upstream
AEC-0002731argKCDSforward31548793155874Upstream
AEC-0002732ygfGCDSforward31558853156670Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948