Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002735 (argO) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002735 showshow history
Names
argO ECDH10B_3098
Product
arginine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3160065 3160700 636 212
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003016 (IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site) Jul 2009
Automated Process Approved IPR004777 (IPR004777 L-lysine exporter/arginine exporter) Jul 2009
Automated Process Approved IPR001123 (IPR001123 Amino acid exporter protein, LeuE-type) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004777
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name argO Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009591
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3098 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product arginine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Protein Sequence Similarity - InterPro Domain: IPR003016
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001123 Amino acid exporter protein, LeuE-type Protein Sequence Similarity - InterPro Domain: IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004777 L-lysine exporter/arginine exporter Protein Sequence Similarity - InterPro Domain: IPR004777
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009591 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009591
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004777
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001321 argO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001405 argO CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002911 argO CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002641 argO CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005918 argO CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002942 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008218 argO CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002917 yggA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006263 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005720 argO CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008577 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079662 argO CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005754 argO CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007226 argO CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003375 argO CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007686 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004295 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007558 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006076 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008333 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005764 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009056 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006110 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006859 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005840 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006352 argO CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005665 argO CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005246 argO CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006094 argO CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027934 argO CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006934 argO CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007762 argO CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009591 argO CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002995 argO CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003246 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003057 argO CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133837 argO CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001091 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003315 yggA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064226 argO CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002250 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001010 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002293 argO CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007395 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004807 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003518 argO CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009487 yggA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008973 yggA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008812 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007661 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006623 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005621 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008547 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006770 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007663 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005401 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002965 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002936 argO CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003838 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007825 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008308 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007310 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005518 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111891 argO CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084703 argO CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099552 argO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006192 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006275 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004814 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003363 yggA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008762 argO CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003912 argO CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003600 yggA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074287 argO CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089158 argO CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003166 yggA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003359 argO CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003079 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009858 yggA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001706 yggA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003859 argO CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002233 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007942 argO CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000428 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006727 argO CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002432 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118305 argO CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006703 argO CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004924 argO CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006565 argO CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006591 argO CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033073 argO CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004638 argO CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003753 argO CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000702 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006241 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004796 argO CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003301 argO CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003971 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001002 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3155065 to 3165700
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002731argKCDSforward31548793155874Downstream
AEC-0002732ygfGCDSforward31558853156670Downstream
AEC-0002733ygfICDScomplement31581693159065Downstream
AEC-0002734yggECDScomplement31592323159972Downstream
AEC-0002735argOCDScomplement31600653160700Matches
AEC-0002736mscSCDScomplement31608393161699Upstream
AEC-0002737fbaACDScomplement31620573163136Upstream
AEC-0002738pgkCDScomplement31633513164514Upstream
AEC-0002739epdCDScomplement31645643165583Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948