Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002738 (pgk) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002738 showshow history
Names
pgk ECDH10B_3101
Product
phosphoglycerate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3163351 3164514 1164 388
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015911 (IPR015911 Phosphoglycerate kinase, conserved site) Jul 2009
Automated Process Approved IPR001576 (IPR001576 Phosphoglycerate kinase) Jul 2009
Automated Process Approved IPR015824 (IPR015824 Phosphoglycerate kinase, N-terminal) Jul 2009
Automated Process Approved IPR015901 (IPR015901 (DEPRECATED) Phosphoglycerate kinase, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015911
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004618 phosphoglycerate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015911
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pgk Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009605
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3101 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphoglycerate kinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015911 Phosphoglycerate kinase, conserved site Protein Sequence Similarity - InterPro Domain: IPR015911
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015824 Phosphoglycerate kinase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR015824
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001576 Phosphoglycerate kinase Protein Sequence Similarity - InterPro Domain: IPR001576
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015901 (DEPRECATED) Phosphoglycerate kinase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015901
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009605 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009605
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015911
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004618 phosphoglycerate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015911
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000211 pgk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000268 pgk CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015182 pgk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002914 pgk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002636 pgk CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005915 pgk CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002945 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008215 pgk CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002920 pgk CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006260 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005717 pgk CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008580 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079665 pgk CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005751 pgk CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007231 pgk CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003378 pgk CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007690 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004298 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007561 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006079 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008336 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005761 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009059 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006107 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006862 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005843 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006355 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005668 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005249 pgk CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006097 pgk CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027937 pgk CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006931 pgk CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007765 pgk CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009605 pgk CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002998 pgk CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003251 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003061 pgk CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133840 pgk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001094 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003318 pgk CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064229 pgk CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002239 pgk CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001012 pgk CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002308 pgk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007398 pgk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004804 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003521 pgk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007664 pgk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009500 pgk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008986 pgk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008808 pgk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007665 pgk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006627 pgk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005624 pgk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008551 pgk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006774 pgk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007667 pgk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005397 pgk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002968 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002939 pgk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003842 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007828 pgk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008305 pgk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007313 pgk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005521 pgk CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111903 pgk CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084707 pgk CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099561 pgk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006188 pgk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006272 pgk CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004811 pgk CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003360 pgk CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008765 pgk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003909 pgk CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003597 pgk CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074291 pgk CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089161 pgk CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003169 pgk CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003362 pgk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003083 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009880 pgk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001701 pgk CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003856 pgk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002236 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242816 pgk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007939 pgk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000425 pgk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006724 pgk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002429 pgk CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118323 pgk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006706 pgk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004921 pgk CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006568 pgk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006594 pgk CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033076 pgk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004641 pgk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003756 pgk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000699 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006244 pgk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004793 pgk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003304 pgk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003974 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000999 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3158351 to 3169514
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002733ygfICDScomplement31581693159065Downstream
AEC-0002734yggECDScomplement31592323159972Downstream
AEC-0002735argOCDScomplement31600653160700Downstream
AEC-0002736mscSCDScomplement31608393161699Downstream
AEC-0002737fbaACDScomplement31620573163136Downstream
AEC-0002738pgkCDScomplement31633513164514Matches
AEC-0002739epdCDScomplement31645643165583Upstream
AEC-0002740yggCCDScomplement31658683166581Upstream
AEC-0002741yggDCDScomplement31665783167087Upstream
AEC-0002742yggFCDScomplement31671093168074Upstream
AEC-0004021yggPCDScomplement31680713169348Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948