Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002739 (epd) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002739 showshow history
Names
epd ECDH10B_3102
Product
D-erythrose 4-phosphate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3164564 3165583 1020 340
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000173 (IPR000173 (DEPRECATED) Glyceraldehyde 3-phosphate dehydrogenase) Jul 2009
Automated Process Approved IPR006422 (IPR006422 D-erythrose-4-phosphate dehydrogenase) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name epd Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009607
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3102 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-erythrose 4-phosphate dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000173 (DEPRECATED) Glyceraldehyde 3-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR000173
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006422 D-erythrose-4-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR006422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009607 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009607
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000974 epd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000835 epd CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015183 epd CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002915 epd CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002635 epd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005914 epd CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002946 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008214 epd CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002921 epd CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006259 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005716 epd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008581 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079666 epd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005750 epd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007232 epd CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003379 epd CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007691 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004299 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007562 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006080 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008337 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005760 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009060 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006106 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006863 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005844 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006356 epd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005669 epd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005250 epd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006098 epd CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027938 epd CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006930 epd CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007766 epd CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009607 epd CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002999 epd CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003252 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003062 epd CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133841 epd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001095 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003319 epd CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064230 epd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002238 epd CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001013 epd CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002309 epd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007399 epd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004803 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003522 epd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007665 epd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009503 epd CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008989 epd CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008807 epd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007666 epd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006628 epd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005625 epd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008552 epd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006775 epd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007668 epd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005396 epd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002969 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002940 epd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003843 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007829 epd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008304 epd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007314 epd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005522 epd CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111906 epd CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084708 epd CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099564 epd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006187 epd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006271 epd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004810 epd CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003359 epd CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008766 epd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003908 epd CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003596 epd CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074292 epd CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089162 epd CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003170 epd CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003363 epd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003084 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009883 epd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001700 epd CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003855 epd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002237 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242815 epd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007938 epd CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000424 epd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006723 epd CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002428 epd CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118326 epd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006707 epd CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004920 epd CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006569 epd CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006595 epd CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033077 epd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004642 epd CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003757 epd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000698 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006245 epd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004792 epd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003305 epd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003975 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000998 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3159564 to 3170583
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002734yggECDScomplement31592323159972Downstream
AEC-0002735argOCDScomplement31600653160700Downstream
AEC-0002736mscSCDScomplement31608393161699Downstream
AEC-0002737fbaACDScomplement31620573163136Downstream
AEC-0002738pgkCDScomplement31633513164514Downstream
AEC-0002739epdCDScomplement31645643165583Matches
AEC-0002740yggCCDScomplement31658683166581Upstream
AEC-0002741yggDCDScomplement31665783167087Upstream
AEC-0002742yggFCDScomplement31671093168074Upstream
AEC-0004021yggPCDScomplement31680713169348Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948