Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002745 (speB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002745 showshow history
Names
speB ECDH10B_3112
Product
agmatinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3175968 3176888 921 307
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006035 (IPR006035 Ureohydrolase) Jul 2009
Automated Process Approved IPR005925 (IPR005925 Agmatinase-related) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006596 polyamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005925
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008783 agmatinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005925
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name speB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009632
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3112 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product agmatinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006035 Ureohydrolase Protein Sequence Similarity - InterPro Domain: IPR006035
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005925 Agmatinase-related Protein Sequence Similarity - InterPro Domain: IPR005925
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009632 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009632
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006596 polyamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005925
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008783 agmatinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005925
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002338 speB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002217 speB CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002923 speB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002620 speB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005899 speB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002961 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008205 speB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002935 speB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006249 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005693 speB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008247 speB pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079683 speB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005734 speB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007255 speB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003394 speB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007715 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004315 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007577 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006095 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008352 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005745 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009075 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006091 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006878 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005859 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006371 speB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005683 speB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005266 speB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006112 speB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027953 speB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006915 speB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007776 speB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009632 speB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003008 speB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003266 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003077 speB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133855 speB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001111 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003334 speB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007407 speB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004786 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003535 speB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007673 speB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009533 speB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009018 speB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008799 speB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007675 speB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006636 speB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005640 speB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008566 speB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006789 speB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007682 speB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005388 speB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002977 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002948 speB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003853 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007837 speB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008290 speB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007329 speB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005537 speB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0111926 speB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084717 speB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099589 speB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006179 speB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006256 speB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004802 speB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003345 speB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008784 speB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003892 speB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003579 speB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074311 speB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089176 speB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003187 speB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003376 speB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3170968 to 3181888
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000043IS5.11repeat_regionforward31706193171813Downstream
AEC-0002743tktACDScomplement31727353174726Downstream
AEC-0002744yggGCDSforward31750043175762Downstream
AEC-0002745speBCDScomplement31759683176888Matches
AEC-0002746speACDScomplement31770263179002Upstream
AEC-0002747yqgBCDScomplement31790113179157Upstream
AEC-0002748yqgCCDSforward31792783179493Upstream
AEC-0002750metKCDSforward31797973180951Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948