Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002797 (hybA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002797 showshow history
Names
hybA ECDH10B_3173
Product
hydrogenase 2 4Fe-4S ferredoxin-type component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3239921 3240907 987 329
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Jul 2009
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hybA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009832
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3173 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product hydrogenase 2 4Fe-4S ferredoxin-type component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009832 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009832
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002778 hybA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002825 hybA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017348 hybA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002497 hybA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005763 hybA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003112 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008122 hybA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003072 hybA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006155 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005571 hybA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007842 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079904 hybA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005657 hybA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005536 hybA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003500 hybA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007899 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000266 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007648 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006165 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008424 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005676 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009144 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006020 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006948 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005929 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006443 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005752 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005335 hybA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006180 hybA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028023 hybA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007645 fdnH_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007858 hybA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009832 hybA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003067 hybA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003343 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003280 hybA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133938 hybA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005836 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003427 hybA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061472 hybA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007489 hybA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004700 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003612 hybA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007748 hybA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009757 hybA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009227 hybA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007356 hybA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007755 hybA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006715 hybA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005713 hybA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006177 hybA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006876 hybA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007760 hybA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005312 hybA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003049 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003016 hybA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003946 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007914 hybA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007157 hybA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007402 hybA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007323 hybA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112058 hybA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084789 hybA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099808 hybA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006087 hybA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006172 hybA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004723 hybA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003150 hybA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008837 hybA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004000 hybA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003513 hybA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074426 hybA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089290 hybA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003250 hybA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003432 hybA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001702 hybA CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010356 hybA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002049 hybA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001857 hybA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002948 hybA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3234921 to 3245907
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002790yghUCDSforward32344943235360Downstream
AEC-0002791hybGCDScomplement32354833235731Downstream
AEC-0002792hybFCDScomplement32357443236085Downstream
AEC-0002793hybECDScomplement32360783236566Downstream
AEC-0002794hybDCDScomplement32365593237053Downstream
AEC-0002795hybCCDScomplement32370533238756Downstream
AEC-0002796hybBCDScomplement32387533239931Overlaps Downstream
AEC-0002797hybACDScomplement32399213240907Matches
AEC-0002798hybOCDScomplement32409103242028Upstream
AEC-0002799yghWCDScomplement32422173242504Upstream
AEC-0002800yghX_3CDSpcomplement32426233243033Upstream
AEC-0004517yghXpseudogenecomplement32426233243507Upstream
AEC-0002801yghX_2CDSpcomplement32430333243386Upstream
AEC-0002802yghZCDSforward32436643244704Upstream
AEC-0002803yqhACDScomplement32447443245238Upstream
AEC-0002804yghACDSforward32454293246313Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948