Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002805 (exbD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002805 showshow history
Names
exbD ECDH10B_3181
Product
membrane spanning protein in TonB-ExbB-ExbD complex
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3246585 3247010 426 142
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014170 (IPR014170 TonB system transport protein ExbD type-1) Jul 2009
Automated Process Approved IPR003400 (IPR003400 Biopolymer transport protein ExbD/TolR) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003400
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003400
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003400
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name exbD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009866
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3181 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product membrane spanning protein in TonB-ExbB-ExbD complex Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014170 TonB system transport protein ExbD type-1 Protein Sequence Similarity - InterPro Domain: IPR014170
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003400 Biopolymer transport protein ExbD/TolR Protein Sequence Similarity - InterPro Domain: IPR003400
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009866 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009866
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003400
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003400
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003400
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001062 exbD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001307 exbD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016542 exbD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000487 exbD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002519 exbD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005753 exbD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003119 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008115 exbD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003079 exbD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006147 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005563 exbD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007832 ExbD CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079911 exbD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005649 exbD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005544 exbD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003510 exbD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007908 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000275 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007656 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006173 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008432 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005668 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009152 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006012 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006956 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005937 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006452 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005760 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005343 exbD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006188 exbD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028031 exbD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007637 exbD_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007866 exbD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009866 exbD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003075 exbD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003351 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003288 exbD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133946 exbD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005845 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003434 exbD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060577 exbD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000224 exbD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001310 exbD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001923 exbD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007499 exbD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004690 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003625 exbD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007758 exbD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009784 exbD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009251 exbD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007346 exbD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007765 exbD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006725 exbD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005723 exbD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006188 exbD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006887 exbD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007770 exbD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005302 exbD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003058 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003025 exbD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003957 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007924 exbD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007147 exbD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007412 exbD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007333 exbD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112075 exbD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084797 exbD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099834 exbD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006076 exbD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006162 exbD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004713 exbD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003291 exbD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008847 exbD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003992 exbD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003503 exbD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074436 exbD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089297 exbD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003257 exbD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003439 exbD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000303 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010455 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002002 exbD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001883 exbD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001423 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241499 exbD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004371 exbD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003723 exbD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006104 exbD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002643 exbD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117580 exbD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005022 exbD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005163 exbD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000760 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009294 exbD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006331 exbD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033268 exbD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004398 exbD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000667 exbD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000547 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004671 exbD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004535 exbD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003491 exbD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004205 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000786 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3241585 to 3252010
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002798hybOCDScomplement32409103242028Downstream
AEC-0002799yghWCDScomplement32422173242504Downstream
AEC-0002800yghX_3CDSpcomplement32426233243033Downstream
AEC-0004517yghXpseudogenecomplement32426233243507Downstream
AEC-0002801yghX_2CDSpcomplement32430333243386Downstream
AEC-0002802yghZCDSforward32436643244704Downstream
AEC-0002803yqhACDScomplement32447443245238Downstream
AEC-0002804yghACDSforward32454293246313Downstream
AEC-0002805exbDCDScomplement32465853247010Matches
AEC-0002806exbBCDScomplement32470173247751Upstream
AEC-0002807metCCDSforward32480033249190Upstream
AEC-0002808yghBCDSforward32493303249989Upstream
AEC-0002809yqhCCDScomplement32500293250985Upstream
AEC-0002810yqhDCDSforward32511223252285Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948