Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002806 (exbB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002806 showshow history
Names
exbB ECDH10B_3182
Product
membrane spanning protein in TonB-ExbB-ExbD complex
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3247017 3247751 735 245
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014164 (IPR014164 TonB-system energizer ExbB type-1) Jul 2009
Automated Process Approved IPR002898 (IPR002898 MotA/TolQ/ExbB proton channel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name exbB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009869
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3182 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product membrane spanning protein in TonB-ExbB-ExbD complex Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014164 TonB-system energizer ExbB type-1 Protein Sequence Similarity - InterPro Domain: IPR014164
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002898 MotA/TolQ/ExbB proton channel Protein Sequence Similarity - InterPro Domain: IPR002898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009869 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009869
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001353 exbB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001515 exbB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016541 exbB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000486 exbB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002520 exbB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005752 exbB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003120 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008114 exbB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003080 exbB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006146 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005562 exbB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007831 ExbB CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079912 exbB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005648 exbB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005545 exbB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003511 exbB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007909 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000276 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007657 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006174 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008433 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005667 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009153 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006011 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006957 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005938 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006453 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005761 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005344 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006189 exbB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028032 exbB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007636 exbB_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007867 exbB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009869 exbB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003076 exbB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003352 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003289 exbB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133947 exbB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005846 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003435 exbB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060576 exbB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000223 exbB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003471 exbB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001922 exbB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007500 exbB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004689 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003626 exbB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007759 exbB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009787 exbB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009254 exbB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007345 exbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007766 exbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006726 exbB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005724 exbB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006189 exbB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006888 exbB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007771 exbB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005301 exbB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003059 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003026 exbB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003958 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007925 exbB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007146 exbB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007413 exbB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007334 exbB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112076 exbB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084798 exbB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099836 exbB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006075 exbB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006161 exbB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004712 exbB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003292 exbB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008848 exbB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003991 exbB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003502 exbB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074437 exbB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089298 exbB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003258 exbB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003440 exbB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000302 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010458 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002001 exbB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001884 exbB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001424 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241493 exbB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004372 exbB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003724 exbB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006103 exbB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002644 exbB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117575 exbB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005023 exbB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005164 exbB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000761 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009295 exbB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006332 exbB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033269 exbB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004397 exbB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000665 exbB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000545 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004670 exbB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004534 exbB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003492 exbB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004206 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000784 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3242017 to 3252751
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002798hybOCDScomplement32409103242028Downstream
AEC-0002799yghWCDScomplement32422173242504Downstream
AEC-0002800yghX_3CDSpcomplement32426233243033Downstream
AEC-0004517yghXpseudogenecomplement32426233243507Downstream
AEC-0002801yghX_2CDSpcomplement32430333243386Downstream
AEC-0002802yghZCDSforward32436643244704Downstream
AEC-0002803yqhACDScomplement32447443245238Downstream
AEC-0002804yghACDSforward32454293246313Downstream
AEC-0002805exbDCDScomplement32465853247010Downstream
AEC-0002806exbBCDScomplement32470173247751Matches
AEC-0002807metCCDSforward32480033249190Upstream
AEC-0002808yghBCDSforward32493303249989Upstream
AEC-0002809yqhCCDScomplement32500293250985Upstream
AEC-0002810yqhDCDSforward32511223252285Upstream
AEC-0002811dkgACDSforward32523903253217Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948