Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002807 (metC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002807 showshow history
Names
metC ECDH10B_3183
Product
cystathionine beta-lyase, PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3248003 3249190 1188 396
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000277 (IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme) Jul 2009
Automated Process Approved IPR006233 (IPR006233 Cystathionine beta-lyase, bacterial) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000277
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000277
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004121 cystathionine beta-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name metC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009878
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3183 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cystathionine beta-lyase, PLP-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR000277
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006233 Cystathionine beta-lyase, bacterial Protein Sequence Similarity - InterPro Domain: IPR006233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009878 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009878
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000277
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004121 cystathionine beta-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006233
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000277
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000511 metC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000466 metC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016540 metC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000485 metC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002521 metC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005751 metC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003121 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008113 metC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003081 metC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006145 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005561 metC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007830 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079913 metC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005647 metC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005546 metC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003512 metC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007910 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000278 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007658 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006175 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008434 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005666 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009154 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006010 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006958 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005939 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006454 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005762 metC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005345 metC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006190 metC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028034 metC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007635 metC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007868 metC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009878 metC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003077 metC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003354 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003290 metC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133949 metC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005847 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003437 metC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060572 metC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000234 metC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000121 metC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001918 metC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007502 metC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004688 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003631 metC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007761 metC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009791 metC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009258 metC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007343 metC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007768 metC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006728 metC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005726 metC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006191 metC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006890 metC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007773 metC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005299 metC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003061 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003028 metC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003960 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007927 metC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007144 metC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007415 metC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007336 metC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112079 metC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084800 metC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099842 metC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006073 metC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006159 metC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004710 metC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003294 metC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008849 metC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003990 metC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003500 metC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074439 metC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089300 metC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003259 metC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003442 metC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000301 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010461 metC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002000 metC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001885 metC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001425 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241492 metC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004373 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003726 metC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006102 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002645 metC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117572 metC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005024 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005165 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000762 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009296 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006333 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033270 metC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004396 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000664 metC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000544 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004669 metC1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004533 metC1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003493 metC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004208 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000783 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3243003 to 3254190
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002800yghX_3CDSpcomplement32426233243033Upstream
AEC-0004517yghXpseudogenecomplement32426233243507Upstream
AEC-0002801yghX_2CDSpcomplement32430333243386Upstream
AEC-0002802yghZCDSforward32436643244704Upstream
AEC-0002803yqhACDScomplement32447443245238Upstream
AEC-0002804yghACDSforward32454293246313Upstream
AEC-0002805exbDCDScomplement32465853247010Upstream
AEC-0002806exbBCDScomplement32470173247751Upstream
AEC-0002807metCCDSforward32480033249190Matches
AEC-0002808yghBCDSforward32493303249989Downstream
AEC-0002809yqhCCDScomplement32500293250985Downstream
AEC-0002810yqhDCDSforward32511223252285Downstream
AEC-0002811dkgACDSforward32523903253217Downstream
AEC-0002812yqhGCDSforward32534173254343Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948