Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002831 (nudF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002831 showshow history
Names
nudF ECDH10B_3208
Product
ADP-ribose pyrophosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3273048 3273677 630 210
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000086 (IPR000086 NUDIX hydrolase domain) Jul 2009
Automated Process Approved IPR004385 (IPR004385 Nucleoside diphosphate pyrophosphatase) Jul 2009
Automated Process Approved IPR015797 (IPR015797 NUDIX hydrolase-like domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004385
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004385
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nudF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009961
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3208 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ADP-ribose pyrophosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000086 NUDIX hydrolase domain Protein Sequence Similarity - InterPro Domain: IPR000086
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015797 NUDIX hydrolase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015797
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004385 Nucleoside diphosphate pyrophosphatase Protein Sequence Similarity - InterPro Domain: IPR004385
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009961 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009961
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004385
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004385
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000760 nudF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000783 nudF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046536 nudF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000469 yqiE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002470 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005726 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003156 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008086 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003119 nudF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006114 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005537 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007807 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079951 nudF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005624 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005571 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003547 nudF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007932 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000310 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007688 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006205 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008464 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005637 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009184 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005981 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006989 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005969 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006484 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005792 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005375 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006220 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028064 nudF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007589 nudF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007893 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009961 nudF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003102 nudF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003377 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003327 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133979 nudF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005879 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003477 yqiE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060549 nudF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003081 nudF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003478 nudF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001023 nudF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007533 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004666 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003656 nudF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007789 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009880 yqiE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009345 yqiE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007317 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007795 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006754 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005754 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006217 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006925 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007801 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005271 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003086 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003053 nudF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003991 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007954 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007118 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007442 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007363 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112131 nudF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084825 nudF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099908 nudF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006047 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006129 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004684 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003176 yqiE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008881 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003964 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003654 yqiE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074463 nudF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089321 nudF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003280 yqiE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003463 nudF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000285 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010515 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001983 nudF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001911 nudF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001441 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241468 nudF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004387 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003744 nudF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006085 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002660 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117527 nudF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005039 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005180 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000687 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009311 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006348 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033289 nudF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004380 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000647 nudF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000524 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004654 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004517 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003508 nudF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004225 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000766 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3268048 to 3278677
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002825mdaBCDSforward32682973268878Downstream
AEC-0002826ygiNCDSforward32689093269223Downstream
AEC-0002827parECDScomplement32692713271163Downstream
AEC-0002828yqiACDScomplement32711923271773Downstream
AEC-0002829cpdACDScomplement32717733272600Downstream
AEC-0002830yqiBCDScomplement32726253273047Downstream
AEC-0002831nudFCDScomplement32730483273677Matches
AEC-0002832tolCCDSforward32738823275363Upstream
AEC-0002833ygiACDSforward32753633275623Upstream
AEC-0002834ygiBCDSforward32756073276182Upstream
AEC-0002835ygiCCDSforward32761883277348Upstream
AEC-0002836ygiDCDScomplement32773863278174Upstream
AEC-0002837zupTCDSforward32783173279090Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948