Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002832 (tolC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002832 showshow history
Names
tolC ECDH10B_3209
Product
transport channel
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3273882 3275363 1482 494
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010130 (IPR010130 Type I secretion outer membrane protein, TolC) Jul 2009
Automated Process Approved IPR003423 (IPR003423 Outer membrane efflux protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015031 protein transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003423
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003423
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tolC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009965
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3209 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product transport channel Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010130 Type I secretion outer membrane protein, TolC Protein Sequence Similarity - InterPro Domain: IPR010130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003423 Outer membrane efflux protein Protein Sequence Similarity - InterPro Domain: IPR003423
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009965 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009965
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003423
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0015031 protein transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010130
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003423
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000759 tolC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000623 tolC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015732 tolC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000468 tolC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002469 tolC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005725 tolC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003157 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008085 tolC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003120 tolC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006112 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005536 tolC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007806 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079952 tolC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005623 tolC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005572 tolC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003548 tolC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007933 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000311 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007689 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006206 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008465 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005636 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009185 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005980 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006990 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005970 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006485 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005793 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005376 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006221 tolC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028065 tolC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007588 tolC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007894 tolC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009965 tolC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003103 tolC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003378 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003328 tolC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133980 tolC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005880 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003478 tolC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060548 tolC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003082 tolC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000111 tolC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001022 tolC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007534 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004665 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003657 tolC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007790 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009882 tolC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009347 tolC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007316 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007796 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006755 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005755 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006218 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006926 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007802 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005270 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003087 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003054 tolC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003992 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007955 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007117 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007443 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007364 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112133 tolC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084826 tolC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099911 tolC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006046 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006128 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004683 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003177 tolC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008882 tolC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003963 tolC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003653 tolC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074464 tolC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089322 tolC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003281 tolC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003464 tolC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000284 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010517 hasF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001982 tolC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003791 tolC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001442 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241467 tolC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004388 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003745 tolC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006083 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002661 tolC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117524 tolC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005041 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005181 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000688 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009313 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006350 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033290 tolC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004379 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000645 tolC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000522 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004653 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004516 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003509 tolC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004226 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000764 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3268882 to 3280363
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002826ygiNCDSforward32689093269223Upstream
AEC-0002827parECDScomplement32692713271163Upstream
AEC-0002828yqiACDScomplement32711923271773Upstream
AEC-0002829cpdACDScomplement32717733272600Upstream
AEC-0002830yqiBCDScomplement32726253273047Upstream
AEC-0002831nudFCDScomplement32730483273677Upstream
AEC-0002832tolCCDSforward32738823275363Matches
AEC-0002833ygiACDSforward32753633275623Overlaps Downstream
AEC-0002834ygiBCDSforward32756073276182Downstream
AEC-0002835ygiCCDSforward32761883277348Downstream
AEC-0002836ygiDCDScomplement32773863278174Downstream
AEC-0002837zupTCDSforward32783173279090Downstream
AEC-0002838ribBCDScomplement32795803280233Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948