Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002837 (zupT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002837 showshow history
Names
zupT ECDH10B_3214
Product
zinc transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3278317 3279090 774 258
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003689 (IPR003689 Zinc/iron permease) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003689
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003689
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003689
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name zupT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009977
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3214 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product zinc transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003689 Zinc/iron permease Protein Sequence Similarity - InterPro Domain: IPR003689
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009977 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009977
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003689
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003689
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003689
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002789 zupT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002844 zupT CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002459 zupT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005721 zupT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003164 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008080 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003127 ygiE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006106 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005532 zupT CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079960 zupT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005619 zupT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005576 zupT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003556 zupT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007938 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000316 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007693 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006210 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008469 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005632 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009189 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005976 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006994 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005974 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006489 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005797 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005380 zupT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006225 zupT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028070 zupT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007580 zupT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007898 zupT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009977 zupT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003108 zupT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003382 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003335 zupT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133985 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005885 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003486 zupT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007538 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004660 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003661 zupT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007794 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009893 ygiE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009358 ygiE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007312 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007800 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006759 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005759 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006222 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006930 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007806 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005266 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003091 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003058 zupT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003998 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007959 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007113 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007447 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007368 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112138 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084830 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099923 zupT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006042 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006124 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004678 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003182 zupT CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008886 zupT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003959 zupT CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003648 zupT CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074469 zupT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089327 zupT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003285 ygiE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003468 zupT CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3273317 to 3284090
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002831nudFCDScomplement32730483273677Upstream
AEC-0002832tolCCDSforward32738823275363Upstream
AEC-0002833ygiACDSforward32753633275623Upstream
AEC-0002834ygiBCDSforward32756073276182Upstream
AEC-0002835ygiCCDSforward32761883277348Upstream
AEC-0002836ygiDCDScomplement32773863278174Upstream
AEC-0002837zupTCDSforward32783173279090Matches
AEC-0002838ribBCDScomplement32795803280233Downstream
AEC-0002839yqiCCDSforward32806073280897Downstream
AEC-0002840ygiLCDSforward32811813281732Downstream
AEC-0000047IS2.9repeat_regionforward32818633283193Downstream
AEC-0002841insC-5CDSforward32819093282319Downstream
AEC-0002842insD-5CDSforward32822773283182Downstream
AEC-0002843yqiGCDSforward32831673285632Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948