Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002838 (ribB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002838 showshow history
Names
ribB ECDH10B_3215
Product
3,4-dihydroxy-2-butanone-4-phosphate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3279580 3280233 654 218
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000422 (IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009231 riboflavin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ribB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009980
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3215 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3,4-dihydroxy-2-butanone-4-phosphate synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB Protein Sequence Similarity - InterPro Domain: IPR000422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0009980 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0009980
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009231 riboflavin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000121 ribB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000239 ribB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016794 ribB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000464 ribB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002455 ribB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005719 ribB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003166 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008078 ribB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003132 ribB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006104 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005530 ribB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009282 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079966 ribB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005617 ribB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005578 ribB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003558 ribB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007940 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000318 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007695 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006212 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008471 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005630 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009191 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005974 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006996 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005976 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006491 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005799 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005382 ribB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006227 ribB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028072 ribB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007578 ribB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007900 ribB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0009980 ribB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003109 ribB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003384 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003337 ribB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133986 ribB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005887 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003492 ribB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061135 ribB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000479 ribB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001428 ribB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000502 ribB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007545 ribB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004655 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003669 ribB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007799 ribB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009907 ribB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009372 ribB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007307 ribB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007805 ribB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006764 ribB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005765 ribB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006228 ribB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006936 ribB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007811 ribB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005261 ribB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003095 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003062 ribB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004003 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007964 ribB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007108 ribB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007454 ribB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007375 ribB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112143 ribB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084834 ribB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099935 ribB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006037 ribB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006118 ribB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004673 ribB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003183 ribB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008890 ribB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003957 ribB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003675 ribB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074470 ribB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089328 ribB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003286 ribB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003469 ribB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000280 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010528 htrP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001978 ribB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003787 ribB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001446 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241460 ribB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004393 ribB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003751 ribB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006077 ribB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002666 ribB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117518 ribB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005046 ribB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005186 ribB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000541 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009317 ribB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006356 ribB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033294 ribB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004373 ribB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000640 ribB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000517 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004649 ribB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004510 ribB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003513 ribB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004233 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000758 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3274580 to 3285233
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002832tolCCDSforward32738823275363Downstream
AEC-0002833ygiACDSforward32753633275623Downstream
AEC-0002834ygiBCDSforward32756073276182Downstream
AEC-0002835ygiCCDSforward32761883277348Downstream
AEC-0002836ygiDCDScomplement32773863278174Downstream
AEC-0002837zupTCDSforward32783173279090Downstream
AEC-0002838ribBCDScomplement32795803280233Matches
AEC-0002839yqiCCDSforward32806073280897Upstream
AEC-0002840ygiLCDSforward32811813281732Upstream
AEC-0000047IS2.9repeat_regionforward32818633283193Upstream
AEC-0002841insC-5CDSforward32819093282319Upstream
AEC-0002842insD-5CDSforward32822773283182Upstream
AEC-0002843yqiGCDSforward32831673285632Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948