Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002856 (ygiH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002856 showshow history
Names
ygiH ECDH10B_3234
Product
conserved inner membrane protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3300461 3301078 618 206
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003811 (IPR003811 Glycerol-3-phosphate acyltransferase, PlsY) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ygiH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010042
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3234 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product conserved inner membrane protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003811 Glycerol-3-phosphate acyltransferase, PlsY Protein Sequence Similarity - InterPro Domain: IPR003811
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010042 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010042
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000617 plsY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000686 plsY CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014826 plsY CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000455 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002439 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005698 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003179 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008057 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003143 ygiH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006083 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005510 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009263 PlsY CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079980 ygiH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005597 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005597 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003572 ygiH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007956 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000330 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007711 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006228 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008486 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010781 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009207 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005958 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007012 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005992 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006507 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005814 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005398 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006243 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028086 ygiH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007563 plsY CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007920 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010042 plsY CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003128 ygiH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003401 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003350 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0133999 ygiH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005900 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003504 ygiH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063905 ygiH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002056 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000925 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004029 ygiH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007560 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004641 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003684 ygiH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007814 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009942 ygiH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009407 ygiH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007293 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007820 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006779 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005779 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006242 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006950 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007825 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005247 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003107 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003074 ygiH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004018 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007979 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007092 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007468 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007389 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112163 ygiH CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084846 ygiH CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099971 ygiH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006022 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006103 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004659 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003201 ygiH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008907 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004049 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003694 ygiH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074492 ygiH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089345 ygiH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003302 ygiH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003489 ygiH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000269 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010559 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001968 plsY CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002308 ygiH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001456 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241420 ygiH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004404 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003764 ygiH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006067 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002677 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117475 ygiH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005056 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005196 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003235 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009327 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006367 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033306 ygiH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004362 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000627 ygiH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000504 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004639 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004499 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003524 ygiH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004247 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000745 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3295461 to 3306078
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002851ygiFCDScomplement32954313296732Upstream
AEC-0002852htrGCDSforward32969743297594Upstream
AEC-0002853ccaCDSforward32976583298896Upstream
AEC-0002854bacACDScomplement32990773299898Upstream
AEC-0002855folBCDScomplement32999883300356Upstream
AEC-0002856ygiHCDSforward33004613301078Matches
AEC-0002857ygiPCDScomplement33010913302023Downstream
AEC-0002858ttdACDSforward33022303303141Downstream
AEC-0002859ttdBCDSforward33031383303743Downstream
AEC-0002860ygjECDSforward33037913305254Downstream
AEC-0002861ygjDCDScomplement33052973306310Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948