Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002858 (ttdA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002858 showshow history
Names
ttdA ECDH10B_3236
Product
L-tartrate dehydratase, alpha subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3302230 3303141 912 304
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004646 (IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004646
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ttdA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010050
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3236 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-tartrate dehydratase, alpha subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR004646
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010050 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010050
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004646
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003044 ttdA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003338 ttdA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002436 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005696 ddtA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003181 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008055 ddtA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003145 ttdA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006081 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005507 ddtA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009260 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079983 ttdA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005594 ddtA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005600 ddtA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003574 ttdA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007959 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000333 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007713 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006230 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008488 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009209 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005956 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007014 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005995 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006509 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005817 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005401 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006246 ddtA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028088 ttdA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007560 ttdA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007924 ttdA pseudogene
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010050 ttdA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003130 ttdA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003404 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003352 ddtA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134001 ttdA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005903 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003506 ttdA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003206 ttdA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008912 ddtA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004051 ddtA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074494 ttdA pseudogene
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089347 ttdA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003304 ttdA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003491 ttdA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3297230 to 3308141
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002852htrGCDSforward32969743297594Upstream
AEC-0002853ccaCDSforward32976583298896Upstream
AEC-0002854bacACDScomplement32990773299898Upstream
AEC-0002855folBCDScomplement32999883300356Upstream
AEC-0002856ygiHCDSforward33004613301078Upstream
AEC-0002857ygiPCDScomplement33010913302023Upstream
AEC-0002858ttdACDSforward33022303303141Matches
AEC-0002859ttdBCDSforward33031383303743Overlaps Downstream
AEC-0002860ygjECDSforward33037913305254Downstream
AEC-0002861ygjDCDScomplement33052973306310Downstream
AEC-0002862rpsUCDSforward33065483306763Downstream
AEC-0002863dnaGCDSforward33068743308619Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948