Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002859 (ttdB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002859 showshow history
Names
ttdB ECDH10B_3237
Product
L-tartrate dehydratase, beta subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3303138 3303743 606 202
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004647 (IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004647
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ttdB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010052
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3237 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-tartrate dehydratase, beta subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR004647
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010052 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010052
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004647
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003079 ttdB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003375 ttdB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002435 ttdB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005695 ttdB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003182 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008054 ttdB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003146 ttdB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006080 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005506 ttdB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009259 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079984 ttdB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005593 ttdB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005601 ttdB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003575 ttdB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007960 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000334 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007714 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006231 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008489 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010803 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009210 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005955 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007015 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005996 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005818 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005402 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006247 ttdB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028089 ttdB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007559 ttdB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007925 ttdB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010052 ttdB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003131 ttdB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003405 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003353 ttdB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134002 ttdB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005904 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003507 ttdB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007712 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003844 ttdB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007965 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010413 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009855 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007096 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008011 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008600 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008410 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008208 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007108 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007974 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005092 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003254 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003220 ttdB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004197 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008135 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008050 ttdB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007617 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008531 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112479 ttdB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084989 ttdB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100400 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005874 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008882 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008038 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003207 ttdB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004052 ttdB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074495 ttdB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089348 ttdB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003305 ttdB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003492 ttdB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3298138 to 3308743
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002853ccaCDSforward32976583298896Upstream
AEC-0002854bacACDScomplement32990773299898Upstream
AEC-0002855folBCDScomplement32999883300356Upstream
AEC-0002856ygiHCDSforward33004613301078Upstream
AEC-0002857ygiPCDScomplement33010913302023Upstream
AEC-0002858ttdACDSforward33022303303141Overlaps Upstream
AEC-0002859ttdBCDSforward33031383303743Matches
AEC-0002860ygjECDSforward33037913305254Downstream
AEC-0002861ygjDCDScomplement33052973306310Downstream
AEC-0002862rpsUCDSforward33065483306763Downstream
AEC-0002863dnaGCDSforward33068743308619Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948