Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002860 (ygjE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002860 showshow history
Names
ygjE ECDH10B_3238
Product
predicted tartrate:succinate antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3303791 3305254 1464 488
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001898 (IPR001898 Solute carrier family 13) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ygjE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010056
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3238 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted tartrate:succinate antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001898 Solute carrier family 13 Protein Sequence Similarity - InterPro Domain: IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010056 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010056
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003275 ttdT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000445 citT CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001991 ygjE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002434 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005694 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003183 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008053 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003147 ygjE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006079 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005505 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0079985 ttdT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005592 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005602 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003576 ttdT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007961 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000335 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007715 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006232 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008490 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010802 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009211 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005954 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007016 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005997 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005819 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005403 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006248 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028090 ygjE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007558 ttdT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007926 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010056 ttdT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003132 ygjE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003406 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003354 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134003 ygjE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005905 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003508 ygjE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003208 ygjE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004053 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003700 ygjE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074496 ygjE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089349 ygjE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003306 ygjE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003493 ygjE CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3298791 to 3310254
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002853ccaCDSforward32976583298896Upstream
AEC-0002854bacACDScomplement32990773299898Upstream
AEC-0002855folBCDScomplement32999883300356Upstream
AEC-0002856ygiHCDSforward33004613301078Upstream
AEC-0002857ygiPCDScomplement33010913302023Upstream
AEC-0002858ttdACDSforward33022303303141Upstream
AEC-0002859ttdBCDSforward33031383303743Upstream
AEC-0002860ygjECDSforward33037913305254Matches
AEC-0002861ygjDCDScomplement33052973306310Downstream
AEC-0002862rpsUCDSforward33065483306763Downstream
AEC-0002863dnaGCDSforward33068743308619Downstream
AEC-0002864rpoDCDSforward33088143310655Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948