Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002869 (ygjG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002869 showshow history
Names
ygjG ECDH10B_3248
Product
putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3315234 3316640 1407 469
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR017747 (IPR017747 Putrescine aminotransferase) Jul 2009
Automated Process Approved IPR010164 (IPR010164 Ornithine aminotransferase) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009447 putrescine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017747
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0033094 butane-1,4-diamine:2-oxoglutarate aminotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017747
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ygjG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010092
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3248 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010164 Ornithine aminotransferase Protein Sequence Similarity - InterPro Domain: IPR010164
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017747 Putrescine aminotransferase Protein Sequence Similarity - InterPro Domain: IPR017747
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010092 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010092
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009447 putrescine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017747
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0033094 butane-1,4-diamine:2-oxoglutarate aminotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017747
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002601 patA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002692 patA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018619 patA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002378 ygjG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009168 ygjG CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003193 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008040 rocD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003155 ygjG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006069 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007228 ygjG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007086 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080000 patA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005579 ygjG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005613 ygjG CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003587 ygjG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007974 rocD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000346 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007727 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006244 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007775 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007457 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009223 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005942 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007029 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006009 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008913 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007607 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005415 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006260 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028100 ygjG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007320 patA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007938 ygjG CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010092 patA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003142 ygjG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003417 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003365 ygjG CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134013 ygjG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005917 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003520 ygjG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061796 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000894 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000402 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001818 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007572 ygjG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004624 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003698 oat CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007826 rocD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009987 oat CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009450 oat CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007239 ygjG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007872 ygjG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006792 ygjG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005791 ygjG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006254 ygjG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006966 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007837 ygjG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005235 ygjG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003119 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003085 oat CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004032 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007992 ygjG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008339 ygjG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007480 ygjG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007152 ygjG CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112189 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084857 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100006 oat CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006010 ygjG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006091 ygjG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004647 rocD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003220 ygjG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004065 ygjG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074511 ygjG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256103 ygjG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003318 ygjG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003505 ygjG CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3310234 to 3321640
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002864rpoDCDSforward33088143310655Upstream
AEC-0002865mugCDScomplement33107343311240Upstream
AEC-0004165ileXtRNAforward33113653311440Upstream
AEC-0002866yqjHCDScomplement33114943312258Upstream
AEC-0002867yqjICDSforward33125463313169Upstream
AEC-0002868aerCDScomplement33133233314843Upstream
AEC-0002869ygjGCDSforward33152343316640Matches
AEC-0002870ygjHCDScomplement33166823317014Downstream
AEC-0002871ebgRCDSforward33172333318216Downstream
AEC-0002872ebgACDSforward33184003321492Downstream
AEC-0002873ebgCCDSforward33214893321938Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948