Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002885 (sstT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002885 showshow history
Names
sstT ECDH10B_3265
Product
sodium:serine/threonine symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3335711 3336955 1245 415
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001991 (IPR001991 Sodium:dicarboxylate symporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sstT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010159
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3265 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product sodium:serine/threonine symporter Experimental - PubMed ID: 12097162
Reference: Escherichia coli K-12 W3133 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001991 Sodium:dicarboxylate symporter Protein Sequence Similarity - InterPro Domain: IPR001991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010159 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010159
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001682 sstT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001983 sstT CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003006 ygjU CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002348 sstT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008021 sstT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003210 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008022 ygjU CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003168 ygjU CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006049 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007245 sstT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007069 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080019 sstT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005562 sstT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005630 sstT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003605 sstT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0007991 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000363 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007744 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006261 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007792 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007440 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009240 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005925 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007046 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006026 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008930 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007624 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005432 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006277 sstT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028116 sstT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007302 sstT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007956 sstT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010159 sstT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003159 sstT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003433 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003379 sstT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134029 sstT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005934 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003536 ygjU CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060875 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000356 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000167 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000966 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007580 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004616 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003706 ygjU CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007833 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010007 ygjU CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007232 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007879 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006799 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005798 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006262 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006974 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007844 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005228 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003127 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003093 ygjU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004042 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007999 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008331 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007487 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007159 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112201 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084864 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100027 sstT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006003 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006084 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004640 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003239 ygjU CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008942 sstT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006361 sstT CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003729 ygjU CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074529 sstT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089371 ygjU CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003334 ygjU CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003543 ygjU CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002614 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010635 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004002 sstT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003672 sstT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003718 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241292 sstT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005205 sstT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003836 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006006 sstT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002736 sstT CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117307 sstT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005117 sstT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008655 sstT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003967 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007077 sstT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007686 sstT CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033370 sstT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007993 sstT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000562 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000433 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004577 sstT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004436 sstT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003585 sstT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004360 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000652 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3330711 to 3341955
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002880ygjOCDScomplement33305063331642Upstream
AEC-0002881ygjPCDSforward33317273332230Upstream
AEC-0002882ygjQCDSforward33323073332999Upstream
AEC-0002883ygjRCDSforward33330603334064Upstream
AEC-0002884alxCDSforward33343473335312Upstream
AEC-0002885sstTCDSforward33357113336955Matches
AEC-0002886ygjVCDScomplement33369603337511Downstream
AEC-0002887uxaACDScomplement33375943339081Downstream
AEC-0002888uxaCCDScomplement33390963340508Downstream
AEC-0002889exuTCDSforward33409913342289Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948