Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002914 (garK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002914 showshow history
Names
garK ECDH10B_3297
Product
glycerate kinase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3366392 3367618 1227 409
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004381 (IPR004381 Glycerate kinase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0031388 organic acid phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004381
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008887 glycerate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004381
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name garK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010271
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_3297 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product glycerate kinase I Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR004381 Glycerate kinase Protein Sequence Similarity - InterPro Domain: IPR004381
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010271 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010271
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0031388 organic acid phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004381
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008887 glycerate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004381
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000103 garK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000031 glxK CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002821 garK CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008056 garK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003244 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0007985 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003195 garK CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006006 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0007283 garK CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0007032 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080051 garK CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0005484 garK CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0005668 garK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003634 garK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008034 garK CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0002799 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0007776 garK CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0006293 garK CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0007824 garK CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0007407 garK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009272 garK CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0005892 garK CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0007078 garK CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0006059 garK CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0008962 garK CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0007656 garK CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0005464 garK CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0006310 garK CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028149 garK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007269 garK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007998 garK CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0010271 garK CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0003192 garK CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003471 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003417 garK CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0134061 garK CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0005967 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003564 yhaD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063886 garK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004009 garK CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0004583 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003732 garK CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0010067 garK CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0009523 garK CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0003149 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003115 garK CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0004069 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0112237 CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0084887 CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100094 garK CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003280 yhaD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008647 garK CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0006397 garK CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0003781 yhaD CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0074571 yhaD CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0089402 yhaD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003369 yhaD CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0003583 garK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001968 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001088 glxK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002851 glxK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003019 glxK_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003027 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3361392 to 3372618
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002909tdcBCDScomplement33608063361795Downstream
AEC-0002910tdcACDScomplement33618943362832Downstream
AEC-0002911tdcRCDSforward33631473363365Downstream
AEC-0002912yhaBCDSforward33636213364160Downstream
AEC-0002913yhaCCDSforward33641823365369Downstream
AEC-0004278rnpBncRNAcomplement33659833366359Downstream
AEC-0002914garKCDScomplement33663923367618Matches
AEC-0002915garRCDScomplement33676343368524Upstream
AEC-0002916garLCDScomplement33685543369324Upstream
AEC-0002917garPCDScomplement33693403370674Upstream
AEC-0002918garDCDSforward33710493372620Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948