Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002915 (garR) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002915 showshow history
Names
garR ECDH10B_3298
Product
tartronate semialdehyde reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3367634 3368524 891 297
Sequence

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Context

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Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006183 (IPR006183 6-phosphogluconate dehydrogenase) Jul 2009
Automated Process Approved IPR006115 (IPR006115 6-phosphogluconate dehydrogenase, NADP-binding) Jul 2009
Automated Process Approved IPR006398 (IPR006398 2-hydroxy-3-oxopropionate reductase) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Jul 2009
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Jul 2009
Automated Process Approved IPR015815 (IPR015815 3-hydroxyisobutyrate dehydrogenase-related) Jul 2009
Automated Process Approved IPR002204 (IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0046487 glyoxylate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006573 valine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008442 3-hydroxyisobutyrate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008679 2-hydroxy-3-oxopropionate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name garR Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010273
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3298 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tartronate semialdehyde reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006398 2-hydroxy-3-oxopropionate reductase Protein Sequence Similarity - InterPro Domain: IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Protein Sequence Similarity - InterPro Domain: IPR006115
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006183 6-phosphogluconate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR006183
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site Protein Sequence Similarity - InterPro Domain: IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015815 3-hydroxyisobutyrate dehydrogenase-related Protein Sequence Similarity - InterPro Domain: IPR015815
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010273 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010273
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006573 valine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0046487 glyoxylate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008679 2-hydroxy-3-oxopropionate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008442 3-hydroxyisobutyrate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002106 garR CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002274 garR CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014855 garR CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002314 garR CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008057 garR CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003245 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007984 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003196 yhaE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006005 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007284 garR CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007031 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080052 garR CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005485 garR CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005669 garR CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003635 garR CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008035 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002800 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007777 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006294 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007825 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007406 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009273 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005891 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007079 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006060 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008963 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007657 garR CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005465 garR CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006311 garR CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028150 garR CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007268 garR_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007999 garR CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010273 garR CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003193 garR CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003472 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003418 garR CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134062 garR CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005968 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003565 yhaE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063887 garR CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002051 garR CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002096 garR CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004011 garR CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007605 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004582 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003733 garR CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007858 garR CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010070 garR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009526 garR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007207 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007905 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006825 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005821 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006288 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007000 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007867 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005202 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003150 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003116 garR CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004070 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008023 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007307 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007512 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007184 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112239 garR CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084888 garR CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100097 garR CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005979 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006059 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004612 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003281 yhaE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008646 garR CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006398 garR CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003782 yhaE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074572 yhaE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089403 yhaE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003370 yhaE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003584 garR CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001967 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002850 garR_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003018 garR_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003026 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3362634 to 3373524
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002910tdcACDScomplement33618943362832Downstream
AEC-0002911tdcRCDSforward33631473363365Downstream
AEC-0002912yhaBCDSforward33636213364160Downstream
AEC-0002913yhaCCDSforward33641823365369Downstream
AEC-0004278rnpBncRNAcomplement33659833366359Downstream
AEC-0002914garKCDScomplement33663923367618Downstream
AEC-0002915garRCDScomplement33676343368524Matches
AEC-0002916garLCDScomplement33685543369324Upstream
AEC-0002917garPCDScomplement33693403370674Upstream
AEC-0002918garDCDSforward33710493372620Upstream
AEC-0002919sohACDSforward33727693373104Upstream
AEC-0002920yhaVCDSforward33731043373568Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948