Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002916 (garL) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002916 showshow history
Names
garL ECDH10B_3299
Product
alpha-dehydro-beta-deoxy-D-glucarate aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3368554 3369324 771 257
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005000 (IPR005000 HpcH/HpaI aldolase/citrate lyase domain) Jul 2009
Automated Process Approved IPR017648 (IPR017648 5-keto-4-deoxy-D-glucarate aldolase) Jul 2009
Automated Process Approved IPR015813 (IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016830 carbon-carbon lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name garL Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010276
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3299 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alpha-dehydro-beta-deoxy-D-glucarate aldolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005000 HpcH/HpaI aldolase/citrate lyase domain Protein Sequence Similarity - InterPro Domain: IPR005000
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017648 5-keto-4-deoxy-D-glucarate aldolase Protein Sequence Similarity - InterPro Domain: IPR017648
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010276 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010276
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016830 carbon-carbon lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002566 garL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002609 garL CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014854 garL CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0002313 garL CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008058 garL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003246 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0007983 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003197 garL CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006004 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0007285 garL CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0007030 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080053 garL CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0005486 garL CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0005670 garL CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003636 garL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008036 garL CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0002801 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0007778 garL CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0006295 garL CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0007826 garL CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0007405 garL CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009274 garL CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0005890 garL CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0007080 garL CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0006061 garL CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0008964 garL CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0007658 garL CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0005466 garL CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0006312 garL CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028151 garL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007267 garL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008000 garL CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0010276 garL CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0003194 garL CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003473 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003419 garL CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0134063 garL CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0005969 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003566 yhaF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063888 garL CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002050 garL CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002097 garL CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004012 garL CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0007606 garL CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0004581 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003734 garL CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0007859 garL CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0010073 garL CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0009529 garL CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0007206 garL CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0007906 garL CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0006826 garL CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0005822 garL CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0006289 garL CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0007001 garL CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0007868 garL CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0005201 garL CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0003151 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003117 garL CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0004071 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0008024 garL CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0007306 garL CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0007513 garL CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0007185 garL CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0112241 garL CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0084889 garL CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100100 garL CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0005978 garL CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0006058 garL CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0004611 garL CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003282 yhaF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008645 garL pseudogene
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0006399 garL CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0003783 yhaF CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089404 yhaF pseudogene
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003371 garL pseudogene
Automated Process Approved Go view Shigella sonnei 046 ADD-0003585 garL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001966 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002849 hpaI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003017 hpaI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003025 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3363554 to 3374324
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002912yhaBCDSforward33636213364160Downstream
AEC-0002913yhaCCDSforward33641823365369Downstream
AEC-0004278rnpBncRNAcomplement33659833366359Downstream
AEC-0002914garKCDScomplement33663923367618Downstream
AEC-0002915garRCDScomplement33676343368524Downstream
AEC-0002916garLCDScomplement33685543369324Matches
AEC-0002917garPCDScomplement33693403370674Upstream
AEC-0002918garDCDSforward33710493372620Upstream
AEC-0002919sohACDSforward33727693373104Upstream
AEC-0002920yhaVCDSforward33731043373568Upstream
AEC-0002921agaRCDScomplement33736233374432Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948