Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002917 (garP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002917 showshow history
Names
garP ECDH10B_3300
Product
predicted (D)-galactarate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3369340 3370674 1335 445
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Automated Process Approved IPR004744 (IPR004744 (DEPRECATED) D-galactonate transporter) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004744
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004744
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004744
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name garP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010279
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3300 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted (D)-galactarate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004744 (DEPRECATED) D-galactonate transporter Protein Sequence Similarity - InterPro Domain: IPR004744
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010279 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010279
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004744
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004744
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004744
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003728 garP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003761 garP CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002312 garP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008059 garP CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003247 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007982 garP CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003198 garP CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006003 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007286 garP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010352 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080054 garP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005487 garP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005671 garP CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003637 garP CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008037 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002802 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007779 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006296 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007827 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007404 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009275 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005889 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007081 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006062 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008965 garP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007659 garP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005467 garP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006313 garP CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028152 garP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007266 garP CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008001 garP CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010279 garP CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003195 garP CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003474 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003420 garP CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134064 garP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005970 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003567 yhaU CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006400 garP CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074574 yhaU CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256107 yhaU CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003372 yhaU CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003586 garP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001971 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002854 exuT_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003022 exuT_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003030 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3364340 to 3375674
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002913yhaCCDSforward33641823365369Downstream
AEC-0004278rnpBncRNAcomplement33659833366359Downstream
AEC-0002914garKCDScomplement33663923367618Downstream
AEC-0002915garRCDScomplement33676343368524Downstream
AEC-0002916garLCDScomplement33685543369324Downstream
AEC-0002917garPCDScomplement33693403370674Matches
AEC-0002918garDCDSforward33710493372620Upstream
AEC-0002919sohACDSforward33727693373104Upstream
AEC-0002920yhaVCDSforward33731043373568Upstream
AEC-0002921agaRCDScomplement33736233374432Upstream
AEC-0002922kbaZCDSforward33746813375961Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948