Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002927 (kbaY) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002927 showshow history
Names
kbaY ECDH10B_3310
Product
tagatose 6-phosphate aldolase 1, kbaY subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3378910 3379770 861 287
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000771 (IPR000771 Fructose-bisphosphate aldolase, class-II) Jul 2009
Automated Process Approved IPR011288 (IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019512 lactose catabolic process via tagatose-6-phosphate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kbaY Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010307
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3310 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tagatose 6-phosphate aldolase 1, kbaY subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000771 Fructose-bisphosphate aldolase, class-II Protein Sequence Similarity - InterPro Domain: IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY Protein Sequence Similarity - InterPro Domain: IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010307 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010307
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0019512 lactose catabolic process via tagatose-6-phosphate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004332 fructose-bisphosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016832 aldehyde-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011288
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000059 kbaY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000109 kbaY CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002296 agaY CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008072 agaY CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003259 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007968 agaY CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003208 kbaY CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005991 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007300 agaY CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009712 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080066 kbaY CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005501 agaY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005685 agaY CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003647 kbaY CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008051 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002816 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007794 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006310 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007841 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007389 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009290 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005874 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007095 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006076 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008980 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007673 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005482 agaY CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006327 agaY CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028165 kbaY CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007252 kbaY_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008014 agaY CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010307 kbaY CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003205 kbaY CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003486 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003434 agaY CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134076 kbaY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005984 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003577 kbaY CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003380 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004574 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006414 agaY CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003822 kbaY_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003744 kbaY CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242851 agaY CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007486 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000527 agaY CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006811 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002499 agaY CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118095 agaY CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006625 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005004 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000800 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006487 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006510 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032995 agaY CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004557 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003664 agaY CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000795 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006158 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004875 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003194 agaY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003838 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001146 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3373910 to 3384770
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002921agaRCDScomplement33736233374432Upstream
AEC-0002922kbaZCDSforward33746813375961Upstream
AEC-0002923agaVCDSforward33759843376457Upstream
AEC-0004536agaW_1CDSpforward33764683376869Upstream
AEC-0002924agaWpseudogeneforward33764683376843Upstream
AEC-0002925agaApseudogeneforward33768383377392Upstream
AEC-0002926agaSCDSforward33777433378897Upstream
AEC-0002927kbaYCDSforward33789103379770Matches
AEC-0002928agaBCDSforward33799373380413Downstream
AEC-0002929agaCCDSforward33804523381255Downstream
AEC-0002930agaDCDSforward33812453382036Downstream
AEC-0002931agaICDSforward33820373382792Downstream
AEC-0002932yraHCDSforward33831933383777Downstream
AEC-0002933yraICDSforward33838573384552Downstream
AEC-0002934yraJCDSforward33845813387097Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948