Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002931 (agaI) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002931 showshow history
Names
agaI ECDH10B_3314
Product
galactosamine-6-phosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3382037 3382792 756 252
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006148 (IPR006148 Glucosamine/galactosamine-6-phosphate isomerase) Jul 2009
Automated Process Approved IPR004547 (IPR004547 Glucosamine-6-phosphate isomerase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006044 N-acetylglucosamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004547
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004342 glucosamine-6-phosphate deaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004547
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name agaI Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010317
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3314 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product galactosamine-6-phosphate isomerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006148 Glucosamine/galactosamine-6-phosphate isomerase Protein Sequence Similarity - InterPro Domain: IPR006148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004547 Glucosamine-6-phosphate isomerase Protein Sequence Similarity - InterPro Domain: IPR004547
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010317 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010317
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006044 N-acetylglucosamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004547
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004342 glucosamine-6-phosphate deaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004547
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004501 agaI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005070 agaI CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002292 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008076 agaI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003263 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007962 agaI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003212 agaI CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0005987 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007304 agaI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009708 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080070 agaI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005505 agaI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005689 agaI CDS
Person Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003651 agaI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008055 agaI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002821 CDS
Person Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010929 agaI pseudogene
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0285378 agaI pseudogene
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007248 nagB_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008018 agaI CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0010317 agaI CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0003209 agaI CDS
Person Uncurated Go view Escherichia coli SE11 AFS-0003490 CDS
Person Uncurated Go view Escherichia coli SMS-3-5 AFT-0003438 CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285300 agaI pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005989 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003581 agaI CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0074589 agaI CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0089417 agaI CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3377037 to 3387792
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002925agaApseudogeneforward33768383377392Upstream
AEC-0002926agaSCDSforward33777433378897Upstream
AEC-0002927kbaYCDSforward33789103379770Upstream
AEC-0002928agaBCDSforward33799373380413Upstream
AEC-0002929agaCCDSforward33804523381255Upstream
AEC-0002930agaDCDSforward33812453382036Upstream
AEC-0002931agaICDSforward33820373382792Matches
AEC-0002932yraHCDSforward33831933383777Downstream
AEC-0002933yraICDSforward33838573384552Downstream
AEC-0002934yraJCDSforward33845813387097Downstream
AEC-0002935yraKCDSforward33871083388199Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948