Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002951 (mtr) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002951 showshow history
Names
mtr ECDH10B_3334
Product
tryptophan transporter of high affinity
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3400340 3401584 1245 415
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002091 (IPR002091 (DEPRECATED) Aromatic amino acid permease) Jul 2009
Automated Process Approved IPR013059 (IPR013059 Tryptophan/tyrosine transporter) Jul 2009
Automated Process Approved IPR013061 (IPR013061 Tryptophan/tryrosine permease, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mtr Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010387
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3334 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tryptophan transporter of high affinity Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013059 Tryptophan/tyrosine transporter Protein Sequence Similarity - InterPro Domain: IPR013059
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013061 Tryptophan/tryrosine permease, conserved site Protein Sequence Similarity - InterPro Domain: IPR013061
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002091 (DEPRECATED) Aromatic amino acid permease Protein Sequence Similarity - InterPro Domain: IPR002091
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010387 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010387
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001640 mtr CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001572 mtr CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002402 mtr CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002277 mtr CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008096 mtr CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003279 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007940 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003230 mtr CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005961 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007325 mtr CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008398 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080086 mtr CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005478 mtr CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005709 mtr CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003666 mtr CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008075 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002841 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007820 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006336 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007867 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007363 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009316 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005848 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007123 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006104 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009008 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007702 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005510 mtr CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006355 mtr CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028194 mtr CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007232 mtr CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008038 mtr CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010387 mtr CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003229 mtr CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003510 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003455 mtr CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134104 mtr CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006011 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003597 mtr CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061107 mtr CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000484 mtr CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001325 mtr CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007633 mtr CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004557 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003760 mtr CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007885 mtr CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010141 mtr CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009595 mtr CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007178 mtr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007931 mtr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006850 mtr CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005850 mtr CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006315 mtr CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007027 mtr CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007892 mtr CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005172 mtr CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003179 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003145 mtr CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004106 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008054 mtr CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007276 mtr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007537 mtr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007209 mtr CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112296 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084917 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100190 mtr CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005954 mtr CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006034 mtr CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004585 mtr CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003520 mtr CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009029 mtr CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006440 mtr CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003804 mtr CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074616 mtr CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089440 mtr CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003398 mtr CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003614 mtr CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001242 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001995 mtr CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000216 mtr_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002627 mtr_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003331 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237379 mtr CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005622 mtr CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001218 mtr CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005390 mtr CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002098 mtr CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119489 mtr CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006149 mtr CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004643 mtr CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005302 mtr CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005193 mtr CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032641 mtr CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005341 mtr CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003236 mtr CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002894 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006394 mtr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006683 mtr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001389 mtr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001671 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003294 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3395340 to 3406584
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002944yhbPCDScomplement33952393395682Downstream
AEC-0002945yhbQCDSforward33957333396035Downstream
AEC-0002946yhbSCDScomplement33960223396525Downstream
AEC-0002947yhbTCDScomplement33965193397043Downstream
AEC-0002948yhbUCDSforward33972523398247Downstream
AEC-0002949yhbVCDSforward33982563399134Downstream
AEC-0002950yhbWCDSforward33992153400222Downstream
AEC-0002951mtrCDScomplement34003403401584Matches
AEC-0002952deaDCDScomplement34017383403627Upstream
AEC-0002953nlpICDScomplement34038073404691Upstream
AEC-0002954pnpCDScomplement34048003407004Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948