Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002970 (dacB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002970 showshow history
Names
dacB ECDH10B_3356
Product
D-alanyl-D-alanine carboxypeptidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3424730 3426163 1434 478
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000667 (IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C) Jul 2009
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004185 serine-type carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dacB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010458
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3356 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-alanyl-D-alanine carboxypeptidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C Protein Sequence Similarity - InterPro Domain: IPR000667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010458 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010458
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004185 serine-type carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000667
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001729 dacB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001376 dacB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018127 dacB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000370 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002255 dacB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003301 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007917 dacB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003249 dacB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005936 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010104 dacB CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080113 dacB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003689 dacB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008099 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002862 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007844 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006359 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007891 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009340 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007148 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006128 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008487 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006378 dacB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028215 dacB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009825 dacB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008061 dacB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010458 dacB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003251 dacB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003531 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003476 dacB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134125 dacB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006032 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003624 dacB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060922 dacB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000366 dacD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000175 dacD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003556 dacB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007657 dacB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004529 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003784 dacB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007909 dacB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010227 dacB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009679 dacB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007955 dacB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006874 dacB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008466 dacB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006340 dacB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007051 dacB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007917 dacB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005148 dacB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003200 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003166 dacB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004133 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008079 dacB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007252 dacB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007562 dacB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007233 dacB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112357 dacB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084937 dacB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100246 dacB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005930 dacB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006011 dacB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009341 dacB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003499 dacB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009005 dacB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003828 dacB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074638 dacB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089461 dacB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003419 dacB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003638 dacB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000992 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001329 dacB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002127 dacB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002557 dacB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001846 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235521 dacB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008105 dacB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000070 dacB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008064 dacB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003684 dacB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127137 dacB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007857 dacB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008553 dacB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000587 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004110 dacB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030308 dacB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006513 dacB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003907 dacB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004271 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007472 dacB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007629 dacB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000505 dacB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000590 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004436 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3419730 to 3431163
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002964glmMCDScomplement34185003419837Upstream
AEC-0002965folPCDScomplement34198303420678Upstream
AEC-0002966ftsHCDScomplement34207683422702Upstream
AEC-0002967rrmJCDScomplement34228023423431Upstream
AEC-0002968yhbYCDSforward34235573423850Upstream
AEC-0002969greACDScomplement34240063424482Upstream
AEC-0002970dacBCDSforward34247303426163Matches
AEC-0002971obgECDScomplement34263493427521Downstream
AEC-0002972yhbECDScomplement34275373428502Downstream
AEC-0002973rpmACDScomplement34286293428886Downstream
AEC-0002974rplUCDScomplement34289073429218Downstream
AEC-0002975ispBCDSforward34294773430448Downstream
AEC-0002976sfsBCDSforward34306763430954Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948