Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002983 (yrbG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002983 showshow history
Names
yrbG ECDH10B_3370
Product
predicted calcium/sodium:proton antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3436042 3437019 978 326
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004837 (IPR004837 Sodium/calcium exchanger membrane region) Jul 2009
Automated Process Approved IPR004481 (IPR004481 Sodium/potassium/calcium exchanger) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yrbG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010502
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3370 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted calcium/sodium:proton antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004481 Sodium/potassium/calcium exchanger Protein Sequence Similarity - InterPro Domain: IPR004481
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004837 Sodium/calcium exchanger membrane region Protein Sequence Similarity - InterPro Domain: IPR004837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010502 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010502
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000825 yrbG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001641 yrbG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015681 yrbG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000354 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002241 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008499 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003315 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007902 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003261 yrbG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005918 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008783 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009049 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080130 yrbG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008911 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009174 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003703 yrbG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008116 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002514 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007858 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006373 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007905 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009710 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009354 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009819 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007163 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006142 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008501 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009291 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008623 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006392 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028229 yrbG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009810 yrbG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008076 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010502 yrbG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003265 yrbG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003545 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003490 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134139 yrbG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006046 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003641 yrbG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060512 yrbG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003094 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002384 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000059 yrbG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007671 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004512 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003799 yrbG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007924 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010271 yrbG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009722 yrbG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007137 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007970 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006889 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008451 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006355 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007066 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007932 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005133 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003214 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003180 yrbG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004149 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008094 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007237 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007577 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007248 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112390 yrbG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084951 yrbG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100284 yrbG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005915 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005996 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008563 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003485 yrbG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008991 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007325 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003842 yrbG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074653 yrbG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089475 yrbG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003433 yrbG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003652 yrbG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002307 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010784 yrbG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002733 yrbG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003122 yrbG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000165 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243503 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005255 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004446 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005767 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003752 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127333 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007785 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008482 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003503 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006747 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008072 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029736 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006441 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004156 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000374 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006687 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004386 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003632 yrbG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004417 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000594 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3431042 to 3442019
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002977yrbACDScomplement34323163432570Upstream
AEC-0002978yrbBCDScomplement34327303433023Upstream
AEC-0002979yrbCCDScomplement34330233433658Upstream
AEC-0002980yrbDCDScomplement34336773434228Upstream
AEC-0002981yrbECDScomplement34342333435015Upstream
AEC-0002982yrbFCDScomplement34350233435832Upstream
AEC-0002983yrbGCDSforward34360423437019Matches
AEC-0002984kdsDCDSforward34370333438019Downstream
AEC-0002985kdsCCDSforward34380403438606Downstream
AEC-0002986yrbKCDSforward34386033439178Downstream
AEC-0002987yhbNCDSforward34391473439704Downstream
AEC-0002988yhbGCDSforward34397113440436Downstream
AEC-0002989rpoNCDSforward34404843441917Downstream
AEC-0002990hpfCDSforward34419403442227Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948