Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002985 (kdsC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002985 showshow history
Names
kdsC ECDH10B_3372
Product
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3438040 3438606 567 189
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013200 (IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3) Jul 2009
Automated Process Approved IPR010023 (IPR010023 KdsC family) Jul 2009
Automated Process Approved IPR006549 (IPR006549 HAD-superfamily hydrolase,subfamily IIIA) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010023
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0019143 3-deoxy-manno-octulosonate-8-phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010023
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kdsC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010506
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3372 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010023 KdsC family Protein Sequence Similarity - InterPro Domain: IPR010023
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006549 HAD-superfamily hydrolase,subfamily IIIA Protein Sequence Similarity - InterPro Domain: IPR006549
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3 Protein Sequence Similarity - InterPro Domain: IPR013200
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010506 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010506
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010023
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0019143 3-deoxy-manno-octulosonate-8-phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010023
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000916 kdsC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000695 kdsC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015679 kdsC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000352 kdsC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002239 kdsC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008497 kdsC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003318 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007900 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003263 yrbI CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005915 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008785 kdsC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009051 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080132 kdsC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008909 kdsC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009176 kdsC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003705 kdsC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008118 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002516 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007860 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006375 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007907 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009712 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009356 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009821 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007165 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006144 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008503 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009293 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008625 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006394 kdsC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028231 kdsC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009808 kdsC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008078 kdsC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010506 kdsC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003267 kdsC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003547 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003492 kdsC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134141 kdsC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006048 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003643 yrbI CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060510 kdsC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000219 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000101 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000057 kdsC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007673 kdsC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004510 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003801 yrbI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007926 kdsC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010279 yrbI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009729 yrbI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007135 kdsC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007972 kdsC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006891 kdsC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008449 kdsC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006357 kdsC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007068 kdsC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007934 kdsC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005131 kdsC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003216 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003182 kdsC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004151 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008096 kdsC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007235 kdsC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007579 kdsC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007250 kdsC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112397 kdsC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084953 kdsC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100290 kdsC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005913 kdsC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005994 kdsC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008565 kdsC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003483 yrbI CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008989 kdsC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007323 kdsC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003844 yrbI CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074655 kdsC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089477 kdsC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003435 yrbI CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003654 kdsC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002309 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010793 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002735 kdsC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001384 kdsC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000163 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243505 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005257 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004444 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005765 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003754 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127349 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007783 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008480 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006745 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008070 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029739 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006439 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004159 kdsC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000372 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006685 kdsC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004384 kdsC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003634 kdsC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004420 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000592 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3433040 to 3443606
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002979yrbCCDScomplement34330233433658Upstream
AEC-0002980yrbDCDScomplement34336773434228Upstream
AEC-0002981yrbECDScomplement34342333435015Upstream
AEC-0002982yrbFCDScomplement34350233435832Upstream
AEC-0002983yrbGCDSforward34360423437019Upstream
AEC-0002984kdsDCDSforward34370333438019Upstream
AEC-0002985kdsCCDSforward34380403438606Matches
AEC-0002986yrbKCDSforward34386033439178Overlaps Downstream
AEC-0002987yhbNCDSforward34391473439704Downstream
AEC-0002988yhbGCDSforward34397113440436Downstream
AEC-0002989rpoNCDSforward34404843441917Downstream
AEC-0002990hpfCDSforward34419403442227Downstream
AEC-0002991ptsNCDSforward34423453442836Downstream
AEC-0002992yhbJCDSforward34428823443736Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948