Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002987 (yhbN) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002987 showshow history
Names
yhbN ECDH10B_3374
Product
predicted transporter subunit: periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3439147 3439704 558 186
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005653 (IPR005653 Organic solvent tolerance-like, N-terminal) Jul 2009
Automated Process Approved IPR014340 (IPR014340 Lipopolysaccharide export system protein LptA) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yhbN Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010510
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3374 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter subunit: periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005653 Organic solvent tolerance-like, N-terminal Protein Sequence Similarity - InterPro Domain: IPR005653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014340 Lipopolysaccharide export system protein LptA Protein Sequence Similarity - InterPro Domain: IPR014340
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010510 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010510
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000562 lptA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000488 lptA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015677 lptA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000350 yhbN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002237 lptA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008495 lptA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003320 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007898 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003265 yhbN CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005911 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008787 lptA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009053 LptA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080134 yhbN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008907 lptA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009178 lptA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003707 lptA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008120 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002518 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007862 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006377 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007909 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009714 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009358 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009823 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007167 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006146 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008505 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009295 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008627 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006396 lptA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028233 yhbN CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009806 lptA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008080 lptA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010510 lptA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003269 yhbN CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003549 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003494 lptA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134143 yhbN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006050 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003645 yhbN CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060508 yhbN CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002387 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000055 yhbN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007675 lptA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004508 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003803 yhbN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007928 lptA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010286 yhbN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009735 yhbN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007133 lptA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007974 lptA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006893 lptA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008447 lptA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006359 lptA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007070 lptA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007936 lptA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005129 lptA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003218 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003184 yhbN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004153 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008098 lptA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007233 lptA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007581 lptA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007252 lptA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112399 yhbN CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084955 yhbN CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100296 yhbN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005911 lptA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005992 lptA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008567 lptA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003481 yhbN CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008987 lptA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007321 lptA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003846 yhbN CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074657 yhbN CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089479 yhbN CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003437 yhbN CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003656 yhbN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002311 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010798 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002737 lptA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001386 lptA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000161 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243508 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005259 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004440 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005763 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003756 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127351 lptA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007781 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008478 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001422 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006743 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008068 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029741 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006437 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004162 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000368 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006683 yhbN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004382 yhbN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003636 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004423 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000588 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3434147 to 3444704
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002980yrbDCDScomplement34336773434228Upstream
AEC-0002981yrbECDScomplement34342333435015Upstream
AEC-0002982yrbFCDScomplement34350233435832Upstream
AEC-0002983yrbGCDSforward34360423437019Upstream
AEC-0002984kdsDCDSforward34370333438019Upstream
AEC-0002985kdsCCDSforward34380403438606Upstream
AEC-0002986yrbKCDSforward34386033439178Overlaps Upstream
AEC-0002987yhbNCDSforward34391473439704Matches
AEC-0002988yhbGCDSforward34397113440436Downstream
AEC-0002989rpoNCDSforward34404843441917Downstream
AEC-0002990hpfCDSforward34419403442227Downstream
AEC-0002991ptsNCDSforward34423453442836Downstream
AEC-0002992yhbJCDSforward34428823443736Downstream
AEC-0002993nprCDSforward34437333444005Downstream
AEC-0002994yrbLCDSforward34442193444851Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948