Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002988 (yhbG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002988 showshow history
Names
yhbG ECDH10B_3375
Product
predicted transporter subunit: ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3439711 3440436 726 242
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yhbG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010512
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3375 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter subunit: ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010512 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010512
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000490 lptB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000396 lptB CDS
Ortholog
Person Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008955 CDS
Automated Process Approved Go view Dickeya dadantii 3937 ABF-0015676 lptB CDS
Person Uncurated Go view Dickeya parazeae Ech586 AGC-0000297 CDS
Person Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305925 CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000349 yhbG CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0002236 lptB CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008494 lptB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003321 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0007897 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003266 yhbG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005910 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0008788 lptB CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0009054 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080135 yhbG CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0008906 lptB CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0009179 lptB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003708 lptB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008121 lptB CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0002519 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0007863 lptB CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0006378 lptB CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0007910 lptB CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0009715 lptB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009359 lptB CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0009824 lptB CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0007168 lptB CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0006147 lptB CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0008506 lptB CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0009296 lptB CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0008628 lptB CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0006397 lptB CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028234 yhbG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009805 lptB_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008081 lptB CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0010512 lptB CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0003270 yhbG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003550 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003495 lptB CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0134144 yhbG CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0006051 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003646 yhbG CDS
Person Uncurated Go view Musicola paradisiaca Ech703 AGA-0008717 CDS
Automated Process Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060507 yhbG CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0000179 CDS
Automated Process Approved Go view Pectobacterium carotovorum WPP14 ADT-0000100 CDS
Person Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000053 CDS
Person Uncurated Go view Pectobacterium sp. PC1 AFL-0004774 CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0007676 lptB CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0004507 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003804 yhbG CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0007929 lptB CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0010289 yhbG CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0009738 yhbG CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0007132 lptB CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0007975 lptB CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0006894 lptB CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0008446 lptB CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0006360 lptB CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0007071 lptB CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0007937 lptB CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0005128 lptB CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0003219 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003185 yhbG CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0004154 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0008099 lptB CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0007232 lptB CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0007582 lptB CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0007253 lptB CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0112400 yhbG CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0084956 yhbG CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100297 yhbG CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0005910 lptB CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0005991 lptB CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0008568 lptB CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003480 yhbG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008986 lptB CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0007320 lptB CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0003847 yhbG CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0074658 yhbG CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0089480 yhbG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003438 yhbG CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0003657 yhbG CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002312 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0010802 yhbG CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002738 yhbG CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0001387 yhbG CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000160 CDS
Automated Process Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243509 CDS
Automated Process Approved Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005260 CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004439 CDS
Automated Process Approved Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005762 CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003757 CDS
Automated Process Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127352 lptB CDS
Automated Process Approved Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007780 CDS
Automated Process Approved Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008477 CDS
Automated Process Approved Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001421 CDS
Automated Process Approved Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006742 CDS
Automated Process Approved Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008067 CDS
Automated Process Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029742 CDS
Automated Process Approved Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006436 CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004164 CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000367 CDS
Automated Process Approved Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006682 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0004381 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003637 yhbG CDS
Automated Process Approved Go view Yersinia pseudotuberculosis PB1/+ AFV-0004425 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis YPIII AFW-0000587 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3434711 to 3445436
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002981yrbECDScomplement34342333435015Upstream
AEC-0002982yrbFCDScomplement34350233435832Upstream
AEC-0002983yrbGCDSforward34360423437019Upstream
AEC-0002984kdsDCDSforward34370333438019Upstream
AEC-0002985kdsCCDSforward34380403438606Upstream
AEC-0002986yrbKCDSforward34386033439178Upstream
AEC-0002987yhbNCDSforward34391473439704Upstream
AEC-0002988yhbGCDSforward34397113440436Matches
AEC-0002989rpoNCDSforward34404843441917Downstream
AEC-0002990hpfCDSforward34419403442227Downstream
AEC-0002991ptsNCDSforward34423453442836Downstream
AEC-0002992yhbJCDSforward34428823443736Downstream
AEC-0002993nprCDSforward34437333444005Downstream
AEC-0002994yrbLCDSforward34442193444851Downstream
AEC-0002995mtgACDScomplement34448483445576Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948