Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0002999 (gltB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0002999 showshow history
Names
gltB ECDH10B_3387
Product
glutamate synthase, large subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3450492 3454952 4461 1487

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Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000583 (IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain) Jul 2009
Automated Process Approved IPR006982 (IPR006982 Glutamate synthase, central-N) Jul 2009
Automated Process Approved IPR002932 (IPR002932 Glutamate synthase domain) Jul 2009
Automated Process Approved IPR002489 (IPR002489 Glutamate synthase, alpha subunit, C-terminal) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006537 glutamate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002932
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015930 glutamate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002489
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gltB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010545
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3387 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glutamate synthase, large subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain Protein Sequence Similarity - InterPro Domain: IPR000583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006982 Glutamate synthase, central-N Protein Sequence Similarity - InterPro Domain: IPR006982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002932 Glutamate synthase domain Protein Sequence Similarity - InterPro Domain: IPR002932
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002489 Glutamate synthase, alpha subunit, C-terminal Protein Sequence Similarity - InterPro Domain: IPR002489
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Uncurated comment The coordinates of this feature have been changed from those reported in the GenBank entry (GBAN:CP000948.1) to correspond to the start site predicted in Escherichia coli K-12 MG1655 (ASAP:ABE-0010545), removing 31 codons from the N-terminus. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu
Reference: Escherichia coli K-12 DH10B 		Oct 2013
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010545 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010545
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006537 glutamate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002932
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015930 glutamate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002489
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001849 gltB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001678 gltB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015711 gltB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002224 gltB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008482 gltB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007885 gltB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003277 gltB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005897 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008801 gltB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009067 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080147 gltB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008894 gltB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009192 gltB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003720 gltB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008132 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002272 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007875 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006390 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007922 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009727 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009371 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009836 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007180 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006159 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008518 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009308 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008640 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006409 gltB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028245 gltB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009737 gltB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008093 gltB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010545 gltB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003282 gltB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003562 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003506 gltB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134155 gltB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006063 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003658 gltB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060530 gltB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003088 gltB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000077 gltB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004494 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003815 gltB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010328 gltB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009777 gltB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003231 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003197 gltB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004170 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112428 gltB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084967 gltB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100335 gltB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003469 gltB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008974 gltB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007308 gltB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003858 gltB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074669 gltB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089490 gltB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003449 gltB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003668 gltB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002289 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010729 aspB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003104 gltB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000185 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243471 gltB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005236 gltB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004469 gltB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005787 gltB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003733 gltB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127279 gltB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007805 gltB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008501 gltB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001963 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006767 gltB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008339 gltB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029716 gltB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006461 gltB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004134 gltB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000397 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006707 gltB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004405 gltB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003614 gltB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004395 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000617 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3445492 to 3459952
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002995mtgACDScomplement34448483445576Upstream
AEC-0002996elbBCDScomplement34455733446226Upstream
AEC-0004280ryhAncRNAforward34463443446464Upstream
AEC-0002997arcBCDScomplement34464563448792Upstream
AEC-0002998yhcCCDScomplement34488883449817Upstream
AEC-0002999gltBCDSforward34504923454952Matches
AEC-0003000gltDCDSforward34549653456383Downstream
AEC-0003001gltFCDSforward34569433457707Downstream
AEC-0003002yhcACDSforward34578793458553Downstream
AEC-0003003yhcDCDSforward34585743460955Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948